RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FAM90A2PQ658T7 463 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 RFLNBQ8N5W9 214 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 OSR1Q8TAX0 266 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 SLC25A39Q9BZJ4 359 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 RAXQ9Y2V3 346 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ELNP15502 786 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ASPHD2Q6ICH7 369 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FAM231DQ6ZW35 169 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 DEFB118Q96PH6 123 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 LAMTOR3Q9UHA4 124 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 A0A1W2PPV9 198 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 RRHO14718 337 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 NDUFB3O43676 98 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 INO80CQ6PI98 192 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 C8orf46Q8TAG6 207 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 SPSB2Q99619 263 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 CXCL13O43927 109 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ORM2P19652 201 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 IFI27L1Q96BM0 104 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 A0A1W2PR80 420 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ANOS1P23352 680 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 SPANXN1Q5VSR9 72 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 TUSC5Q8IXB3 177 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ANKRD31Q8N7Z5 1873 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 CACNG7P62955 275 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 C2orf83Q53S99 150 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 UFC1Q9Y3C8 167 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 KRTCAP3Q53RY4 240 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM78Q5T7P6 136 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 LYG1Q8N1E2 194 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 OR11H6Q8NGC7 330 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF492Q9P255 531 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 COX8AP10176 69 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 CCDC144NLQ6NUI1 221 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ASCL4Q6XD76 172 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 RAX2Q96IS3 184 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 GP6Q9HCN6 339 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 POLR2AP24928 1970 aaKnown RBP3.97□□□□□ -1.77
SCN1A-220ENST00000641603 LYZP61626 148 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 SRSF1Q07955 248 aaKnown RBP eCLIP3.97□□□□□ -1.77
SCN1A-220ENST00000641603 C9orf153Q5TBE3 101 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 SIGLEC12Q96PQ1 595 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 GTSF1LQ9H1H1 148 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 MRPL23Q16540 153 aaKnown RBP3.97□□□□□ -1.77
SCN1A-220ENST00000641603 LHX8Q68G74 356 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 RTN4RL2Q86UN3 420 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 SIGLEC8Q9NYZ4 499 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 RTTNQ86VV8 2226 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 MIA3Q5JRA6 1907 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 TRAV5A0A0B4J249 113 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 K7ESM1 405 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 RBP4P02753 201 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF137PP52743 207 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 BCL6BQ8N143 479 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-220ENST00000641603 TPRX1Q8N7U7 411 aa3.97□□□□□ -1.77
SCN1A-220ENST00000641603 A0A1W2PPM0 123 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 ID1P41134 155 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 SUPT4H1P63272 117 aaKnown RBP3.96□□□□□ -1.77
SCN1A-220ENST00000641603 DEFB115Q30KQ5 88 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 SHISA6Q6ZSJ9 500 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 LYPD1Q8N2G4 141 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 AKIRIN1Q9H9L7 192 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-220ENST00000641603 PRR13Q9NZ81 148 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 MLF2Q15773 248 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-220ENST00000641603 PIGYQ3MUY2 71 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 ABHD14AQ9BUJ0 271 aa3.96□□□□□ -1.77
SCN1A-220ENST00000641603 AZU1P20160 251 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 SSTR5P35346 364 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 C1orf61Q13536 156 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM14EPQ6UXP3 125 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 LMO7DNF2Z398 122 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 CA6P23280 308 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 SLAQ13239 276 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 C11orf52Q96A22 123 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 ELSPBP1Q96BH3 223 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 QSER1Q2KHR3 1735 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 KNL1Q8NG31 2342 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 K7EMI3 77 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 IL11RAQ14626 422 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 TMEFF1Q8IYR6 380 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 PGLYRP4Q96LB8 373 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 MUC21A0A0G2JKD1 596 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 MUC21A0A140T8X8 626 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 CTGFP29279 349 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 LGALS9BQ3B8N2 356 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 MUC21Q5SSG8 566 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 LGALS9CQ6DKI2 356 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 ASCL2Q99929 193 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM140Q9NV12 185 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 OR2H2O95918 312 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 MT-CO3P00414 261 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 VKORC1L1Q8N0U8 176 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 A0A1W2PNR3 127 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 RTP5Q14D33 572 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 C1QTNF4Q9BXJ3 329 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 PROCRQ9UNN8 238 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 TRGV8A0A0C4DH27 118 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 SCO2A0A1W2PP80 73 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 HIGD1CA8MV81 97 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 WNT2P09544 360 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms