RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IGLV3-16A0A075B6K0 115 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PRE2 83 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 TNFSF11O14788 317 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 WNT2P09544 360 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SMIM10L1P0DMW3 83 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PTGDSP41222 190 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PAX9P55771 341 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 FOXI1Q12951 378 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 H1FNTQ75WM6 255 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM178AQ8NBL3 297 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 FGF14Q92915 247 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SMIM10Q96HG1 83 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF256Q9Y2P7 627 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 ATP23Q9Y6H3 246 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 NDUFV3P56181 108 aaKnown RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PSG4Q00888 419 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 ID3Q02535 119 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 CST6Q15828 149 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF726P1Q15940 193 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PPP1R27Q86WC6 154 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 GCSAMQ8N6F7 178 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 OR10J6PQ8NGY7 276 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 NEU4Q8WWR8 484 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 NRGNQ92686 78 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 BORCS8Q96FH0 119 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 HSD17B10Q99714 261 aaKnown RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 C1orf43Q9BWL3 253 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 RNF114Q9Y508 228 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SPAG17Q6Q759 2223 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 SCO2A0A1W2PP80 73 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 A8MWV9 139 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 RPL8P62917 257 aaKnown RBP4.84□□□□□ -1.63
SCN1A-216ENST00000637968 KISS1Q15726 138 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 RPP25LQ8N5L8 163 aaKnown RBP4.84□□□□□ -1.63
SCN1A-216ENST00000637968 DEFB119Q8N690 84 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 DNAJC30Q96LL9 226 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 TXNIPQ9H3M7 391 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 OSTCQ9NRP0 149 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 TNFRSF19Q9NS68 423 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PP55 124 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PQU0 124 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 BCL3P20749 454 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 PSMB2P49721 201 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 RPL31P62899 125 aaKnown RBP4.84□□□□□ -1.63
SCN1A-216ENST00000637968 POU3F1Q03052 451 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-216ENST00000637968 MRAPQ8TCY5 172 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 PVRP15151 417 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 EMDP50402 254 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 ERVK11-1P61568 191 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM42Q69YG0 159 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 FAM159AQ6UWV7 190 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 ATP6V0E2Q8NHE4 81 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 DLX4Q92988 240 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-216ENST00000637968 NAT6Q93015 286 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM54Q969K7 222 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 VSTM2LQ96N03 204 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 HIST1H4GQ99525 98 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 FRMPD3Q5JV73 1810 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 DOCK9Q9BZ29 2069 aa4.84□□□□□ -1.63
SCN1A-216ENST00000637968 SCN5AQ14524 2016 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 DOCK6Q96HP0 2047 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 LMX1BO60663 402 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 SLC25A5P05141 298 aaKnown RBP4.84□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF688P0C7X2 276 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 RNPS1Q15287 305 aaKnown RBP4.84□□□□□ -1.64
SCN1A-216ENST00000637968 PQLC2Q6ZP29 291 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 OR1L8Q8NGR8 309 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 HDHD3Q9BSH5 251 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-216ENST00000637968 ANAPC10Q9UM13 185 aa4.84□□□□□ -1.64
SCN1A-216ENST00000637968 SCN2AQ99250 2005 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 PLXND1Q9Y4D7 1925 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 LOC102723996A0A087X1L8 192 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 A8MWL6 223 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 CCDC179H3BU77 68 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 FAM106CPP0CH98 169 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 KIR2DL1P43626 348 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 MZT1Q08AG7 82 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 FAM106AQ4KMX7 169 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 SPATA46Q5T0L3 261 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM116Q8NCL8 245 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TM2D1Q9BX74 207 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 CENPVL1A0A0U1RR11 272 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 BRI3O95415 125 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 AREGP15514 252 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 RPL13AP40429 203 aaKnown RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 CENPWQ5EE01 88 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 GAPTQ8N292 157 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF611Q8N823 705 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 FADS6Q8N9I5 356 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 OR13H1Q8NG92 308 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF501Q96CX3 271 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TIMD4Q96H15 378 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 CDX2Q99626 313 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 C1QTNF5Q9BXJ0 243 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 LY96Q9Y6Y9 160 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 A0A0G2JMZ2 1700 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 LRRC37A2A6NM11 1700 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 LRRC37AA6NMS7 1700 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 CD38P28907 300 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 FOXA3P55318 350 aaPredicted RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms