RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C14orf166Q9Y224 244 aaKnown RBP14.22□□□□□ -0.13
CLN3-259ENST00000637551 MSGN1A6NI15 193 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 FAM223BA6NKX1 122 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 CCL24O00175 119 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 UPK2O00526 184 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 DHFRP00374 187 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 SERPINE2P07093 398 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 ZNF45Q02386 682 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 KLF9Q13886 244 aaPredicted RBP14.21□□□□□ -0.13
CLN3-259ENST00000637551 SCGB2B2Q4G0G5 96 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 KPRPQ5T749 579 aaPredicted RBP14.21□□□□□ -0.13
CLN3-259ENST00000637551 ASPHD1Q5U4P2 390 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 FOXB2Q5VYV0 432 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 FAM223AQ8IWN6 122 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 VKORC1L1Q8N0U8 176 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 TOMM5Q8N4H5 51 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 ADAD2Q8NCV1 583 aaKnown RBP14.21□□□□□ -0.13
CLN3-259ENST00000637551 OR13C8Q8NGS7 320 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 OR5B3Q8NH48 314 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 PHB2Q99623 299 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 COMMD5Q9GZQ3 224 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 SRRQ9GZT4 340 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 KLK15Q9H2R5 256 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 HRASLSQ9HDD0 168 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 PRNDQ9UKY0 176 aa14.21□□□□□ -0.13
CLN3-259ENST00000637551 LGALS1P09382 135 aaKnown RBP14.2□□□□□ -0.14
CLN3-259ENST00000637551 OR8U8P0C7N1 319 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 CD33P20138 364 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 LPAR6P43657 344 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 SAMD5Q5TGI4 173 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 C8orf86Q6ZUL3 223 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 MRGPRFQ96AM1 343 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 BATF3Q9NR55 127 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 GPR132Q9UNW8 380 aa14.2□□□□□ -0.14
CLN3-259ENST00000637551 TRBV9A0A0B4J1U6 114 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 TEX22C9J3V5 150 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 CRYGCP07315 174 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 UCP1P25874 307 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 PPP5CP53041 499 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 TPPP2P59282 170 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 MRPL41Q8IXM3 137 aaKnown RBP14.19□□□□□ -0.14
CLN3-259ENST00000637551 OR51S1Q8NGJ8 323 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 MARCH1Q8TCQ1 289 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 RAX2Q96IS3 184 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 SEC22AQ96IW7 307 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 SLC25A21Q9BQT8 299 aaPredicted RBP14.19□□□□□ -0.14
CLN3-259ENST00000637551 QTRT1Q9BXR0 403 aaKnown RBP14.19□□□□□ -0.14
CLN3-259ENST00000637551 CACFD1Q9UGQ2 172 aa14.19□□□□□ -0.14
CLN3-259ENST00000637551 C3orf85A0A1B0GTC6 90 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 A6NHS1 94 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 CYB5BO43169 146 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 SNAPC5O75971 98 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 TRGV3P03979 118 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 HIST1H1BP16401 226 aaKnown RBP14.18□□□□□ -0.14
CLN3-259ENST00000637551 OR2B8PP59922 312 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 ZNF616Q08AN1 781 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 SSX9Q7RTT3 188 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 FAM219AQ8IW50 185 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 NECAP1Q8NC96 275 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 GALNT14Q96FL9 552 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 TMEM14BQ9NUH8 114 aa14.18□□□□□ -0.14
CLN3-259ENST00000637551 ZMAT5Q9UDW3 170 aaKnown RBP14.18□□□□□ -0.14
CLN3-259ENST00000637551 NAP1L6A6NFF2 107 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 KRASP01116 189 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 DHODHQ02127 395 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 LCNL1Q6ZST4 164 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 ZNF429Q86V71 674 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 OR1L8Q8NGR8 309 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 C7orf50Q9BRJ6 194 aaKnown RBP14.17□□□□□ -0.14
CLN3-259ENST00000637551 RTBDNQ9BSG5 229 aaPredicted RBP14.17□□□□□ -0.14
CLN3-259ENST00000637551 TMEM222Q9H0R3 208 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 C5orf66Q9H5L9 145 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 COA4Q9NYJ1 87 aa14.17□□□□□ -0.14
CLN3-259ENST00000637551 KMT2CQ8NEZ4 4911 aaKnown RBP14.16□□□□□ -0.14
CLN3-259ENST00000637551 C13orf42A0A1B0GVH6 325 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 CRYM-AS1A6NIL9 109 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 C15orf61A6NNL5 157 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 CTRB1P17538 263 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 CTRB2Q6GPI1 263 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 FAAP20Q6NZ36 180 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 H2BFWTQ7Z2G1 175 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 OR11H1Q8NG94 326 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 OR1L6Q8NGR2 347 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 IL22RA2Q969J5 263 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 FYTTD1Q96QD9 318 aaKnown RBP14.16□□□□□ -0.14
CLN3-259ENST00000637551 NAA60Q9H7X0 242 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 GNB4Q9HAV0 340 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 MCUBQ9NWR8 336 aa14.16□□□□□ -0.14
CLN3-259ENST00000637551 CDS2O95674 445 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 HSPB1P04792 205 aaKnown RBP14.15□□□□□ -0.14
CLN3-259ENST00000637551 P0C879 139 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 ZP3P21754 424 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 PSMB6P28072 239 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 G6PCP35575 357 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 INSL3P51460 131 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 SRPXP78539 464 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 CNPY1Q3B7I2 92 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 C10orf55Q5SWW7 151 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 TRIQKQ629K1 86 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 ZNF343Q6P1L6 599 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms