RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF429Q86V71 674 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 EAF1Q96JC9 268 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 RAB40CQ96S21 281 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 HINT2Q9BX68 163 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 CYTL1Q9NRR1 136 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 NUP50Q9UKX7 468 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 TCF19Q9Y242 345 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 A0A0U1RQK1 487 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 TEX50A0A1B0GTY4 177 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 BCL2L11O43521 198 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 GPR137BO60478 399 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 LGALS7P47929 136 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 TMEM217Q8N7C4 229 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 FBXL15Q9H469 300 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 WFDC1Q9HC57 220 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 FBXL17Q9UF56 701 aa16.1■□□□□ 0.17
CLN3-250ENST00000636839 CRYGBP07316 175 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 SPCS3P61009 180 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 GPR157Q5UAW9 335 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 SMIM8Q96KF7 97 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 OR4C12Q96R67 309 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 KANTRA0A1W2PQU2 76 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 FCN1O00602 326 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 SPDEFO95238 335 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 METTL15P1P0C7V9 234 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 ARHGDIBP52566 201 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 ARL16Q0P5N6 197 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 CCDC144NLQ6NUI1 221 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 OR8H1Q8NGG4 311 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 TMEM167AQ8TBQ9 72 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 ARPC5LQ9BPX5 153 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 AIFM2Q9BRQ8 373 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 GON7Q9BXV9 100 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 METTL1Q9UBP6 276 aaKnown RBP16.09■□□□□ 0.17
CLN3-250ENST00000636839 WSB1Q9Y6I7 421 aa16.09■□□□□ 0.17
CLN3-250ENST00000636839 MOSP00540 346 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 HSPE1P61604 102 aaKnown RBP16.08■□□□□ 0.16
CLN3-250ENST00000636839 RPL23AP62750 156 aaKnown RBP16.08■□□□□ 0.16
CLN3-250ENST00000636839 RPL8P62917 257 aaKnown RBP16.08■□□□□ 0.16
CLN3-250ENST00000636839 VMA21Q3ZAQ7 101 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 HAPLN4Q86UW8 402 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 OR10W1Q8NGF6 305 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 ZNF471Q9BX82 626 aaPredicted RBP16.08■□□□□ 0.16
CLN3-250ENST00000636839 ITGB1BP2Q9UKP3 347 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 PRNDQ9UKY0 176 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 PAIP2BQ9ULR5 123 aaKnown RBP16.08■□□□□ 0.16
CLN3-250ENST00000636839 SIGLEC9Q9Y336 463 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 NOTCH2Q04721 2471 aa16.08■□□□□ 0.16
CLN3-250ENST00000636839 A0A1B0GW64 132 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 OOSP1A8MZH6 123 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 MED6O75586 246 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 GATA3P23771 443 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 VDAC2P45880 294 aaPredicted RBP16.07■□□□□ 0.16
CLN3-250ENST00000636839 MMDQ15546 238 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 OR52E5Q8NH55 327 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 FOXC2Q99958 501 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 CGB1A6NKQ9 187 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 CLINT1Q14677 625 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 PDLIM3Q53GG5 364 aaPredicted RBP16.07■□□□□ 0.16
CLN3-250ENST00000636839 RPL7L1Q6DKI1 246 aaKnown RBP16.07■□□□□ 0.16
CLN3-250ENST00000636839 TEX261Q6UWH6 196 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 SLA2Q9H6Q3 261 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 U3KQ87 197 aa16.07■□□□□ 0.16
CLN3-250ENST00000636839 FLNAP21333 2647 aaKnown RBP16.06■□□□□ 0.16
CLN3-250ENST00000636839 THNSL2Q86YJ6 484 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 VSTM2AQ8TAG5 236 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 C22orf15Q8WYQ4 148 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 HOXA1P49639 335 aaPredicted RBP16.06■□□□□ 0.16
CLN3-250ENST00000636839 DYNLT3P51808 116 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 PRSS8Q16651 343 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 TEX45Q8NA69 505 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 TMEM170AQ8WVE7 144 aa16.06■□□□□ 0.16
CLN3-250ENST00000636839 TSNAXQ99598 290 aaKnown RBP16.06■□□□□ 0.16
CLN3-250ENST00000636839 HEYLQ9NQ87 328 aaPredicted RBP16.06■□□□□ 0.16
CLN3-250ENST00000636839 GNB1P62873 340 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 SSBP2P81877 361 aaPredicted RBP16.05■□□□□ 0.16
CLN3-250ENST00000636839 BCL6BQ8N143 479 aaPredicted RBP16.05■□□□□ 0.16
CLN3-250ENST00000636839 Q8N6K4 173 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 ZNF680Q8NEM1 530 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 OR5C1Q8NGR4 320 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 OR2T10Q8NGZ9 312 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 COMMD5Q9GZQ3 224 aa16.05■□□□□ 0.16
CLN3-250ENST00000636839 RRHO14718 337 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 APELAP0DMC3 54 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 C4BPBP20851 252 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 TAS2R30P59541 319 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 SLC51BQ86UW2 128 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 PPP1R27Q86WC6 154 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 OR4A5Q8NH83 315 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 SLC25A31Q9H0C2 315 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 NDUFA4L2Q9NRX3 87 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 ZNF257Q9Y2Q1 563 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 MDFIC2A0A1B0GVS7 189 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 C15orf62A8K5M9 175 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 NBR2O15453 112 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 PRCDQ00LT1 54 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 EXOSC2Q13868 293 aaKnown RBP16.04■□□□□ 0.16
CLN3-250ENST00000636839 EBI3Q14213 229 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 CYB5R2Q6BCY4 276 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 OR8G2PQ6IF36 304 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms