RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 TMEM109Q9BVC6 243 aa-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 RAB1BQ9H0U4 201 aa-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 CDC42SE1Q9NRR8 79 aa-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 HDGFL3Q9Y3E1 203 aa-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 PCYT1BQ9Y5K3 369 aaPredicted RBP-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 KIF27Q86VH2 1401 aa-0.81□□□□□ -2.54
SCN1A-211ENST00000635893 ZNF292O60281 2723 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 GOLGA6L7A0A1B0GV03 622 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 H0YC42 278 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 UGT2B11O75310 529 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 NUP62P37198 522 aaPredicted RBP-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 EIF2B2P49770 351 aaKnown RBP-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 HPCAP84074 193 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 SPRNQ5BIV9 151 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 AAED1Q7RTV5 226 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 OOSP2Q86WS3 158 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 WFDC11Q8NEX6 87 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 OR1M1Q8NGA1 313 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 CIDECQ96AQ7 238 aaPredicted RBP-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 SLC50A1Q9BRV3 221 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 ENPP5Q9UJA9 477 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 PSME2Q9UL46 239 aa-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 RBMX2Q9Y388 322 aaKnown RBP-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 ASH1LQ9NR48 2969 aaKnown RBP-0.82□□□□□ -2.54
SCN1A-211ENST00000635893 UNC79Q9P2D8 2635 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 TENM2Q9NT68 2774 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 FUOMA2VDF0 154 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 F5H5K5 113 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 H0YIV9 168 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 COX7A2LO14548 114 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 OR1I1O60431 355 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 OR5F1O95221 314 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 FKBP2P26885 142 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 HAAOP46952 286 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 H2BFSP57053 126 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 PDE6HQ13956 83 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 VAMP3Q15836 100 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 KCNJ8Q15842 424 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 LCN15Q6UWW0 184 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 LINC00471Q8N535 108 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 CMTM5Q96DZ9 223 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 PARVAQ9NVD7 372 aa-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 SBDSQ9Y3A5 250 aaKnown RBP eCLIP-0.83□□□□□ -2.54
SCN1A-211ENST00000635893 HIVEP1P15822 2718 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 LRP1BQ9NZR2 4599 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 NQO2P16083 231 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 PSG9Q00887 426 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 DMTNQ08495 405 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 ZNF826PQ6ZT77 177 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 ZNF550Q7Z398 422 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 MED10Q9BTT4 135 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 TLNRD1Q9H1K6 362 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 XAGE1AQ9HD64 81 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 PRELID1Q9Y255 219 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 ASCC3Q8N3C0 2202 aaKnown RBP-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 RALGAPA2Q2PPJ7 1873 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 PIEZO1Q92508 2521 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 TTC28Q96AY4 2481 aa-0.84□□□□□ -2.54
SCN1A-211ENST00000635893 SETD2Q9BYW2 2564 aaPredicted RBP-0.85□□□□□ -2.54
SCN1A-211ENST00000635893 K7EIL1 84 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CITO14578 2027 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 SGCEO43556 437 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 DNAL4O96015 105 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 SFTPCP11686 197 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CXCL2P19875 107 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 PTNP21246 168 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CFL1P23528 166 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 DLX6P56179 175 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 RAB8AP61006 207 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 FABP5Q01469 135 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 ANK2Q01484 3957 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 MPV17LQ2QL34 196 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 C12orf74Q32Q52 190 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 C6orf52Q5T4I8 152 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 SOSTDC1Q6X4U4 206 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 SSX8Q7RTT4 187 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 TMEM251Q8N6I4 163 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CCDC12Q8WUD4 166 aaPredicted RBP-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 GNPNAT1Q96EK6 184 aaPredicted RBP-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 SMIM12Q96EX1 92 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CCL13Q99616 98 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 PRRG3Q9BZD7 231 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 HECTD4Q9Y4D8 3996 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 CEP192Q8TEP8 1941 aa-0.85□□□□□ -2.55
SCN1A-211ENST00000635893 A0A1B0GW54 56 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 RAB19A4D1S5 217 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 GGT3PA6NGU5 568 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 METTL15A6NJ78 407 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 LIN7AO14910 233 aaPredicted RBP-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 ADAP1O75689 374 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 LDOC1O95751 146 aaPredicted RBP-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 IGHV3-7P01780 117 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 CXCL3P19876 107 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 CSN1S1P47710 185 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 ZNF137PP52743 207 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 SMAGPQ0VAQ4 97 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 JOSD1Q15040 202 aaPredicted RBP-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 OR4D1Q15615 310 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 EXOC3L4Q17RC7 722 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 NKAIN1Q4KMZ8 207 aa-0.86□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms