RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 PEF1Q9UBV8 284 aaKnown RBP10.91□□□□□ -0.66
PNKP-223ENST00000629179 DPPA5A6NC42 116 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 NOL3O60936 208 aaKnown RBP10.9□□□□□ -0.66
PNKP-223ENST00000629179 OR2J3O76001 311 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 IFNA6P05013 189 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 ZP3P21754 424 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 UCP3P55916 312 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 OR2B8PP59922 312 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 ATP5G2Q06055 141 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 RNASE10Q5GAN6 216 aaKnown RBP10.9□□□□□ -0.66
PNKP-223ENST00000629179 ZNF429Q86V71 674 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 C15orf40Q8WUR7 153 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 DIRAS2Q96HU8 199 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 ZNF257Q9Y2Q1 563 aa10.9□□□□□ -0.66
PNKP-223ENST00000629179 FAM223BA6NKX1 122 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 MARCH11A6NNE9 402 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 NPIPB5A8MRT5 1133 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 GABARAPH6UMI1 98 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 KRASP01116 189 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 REG1AP05451 166 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 PSMB6P28072 239 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 G6PCP35575 357 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 ERVK-16P61578 105 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 EXOSC2Q13868 293 aaKnown RBP10.89□□□□□ -0.67
PNKP-223ENST00000629179 KLF5Q13887 457 aaPredicted RBP10.89□□□□□ -0.67
PNKP-223ENST00000629179 TBC1D26Q86UD7 250 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 FAM223AQ8IWN6 122 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 SLC38A6Q8IZM9 456 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 NECAP1Q8NC96 275 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 OR4D10Q8NGI6 311 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 C6orf62Q9GZU0 229 aaPredicted RBP10.89□□□□□ -0.67
PNKP-223ENST00000629179 CEPT1Q9Y6K0 416 aa10.89□□□□□ -0.67
PNKP-223ENST00000629179 LY86O95711 162 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 CD74P04233 296 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 CRYGCP07315 174 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 PGAM2P15259 253 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 CTRB1P17538 263 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 PI3P19957 117 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 S100GP29377 79 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 SYNJ2BPP57105 145 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 IL18Q14116 193 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 C15orf32Q32M92 178 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 CTRB2Q6GPI1 263 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 LHFPL1Q86WI0 220 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 TMEM229BQ8NBD8 167 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 FANCD2OSQ96PS1 177 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 OR4C12Q96R67 309 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 COMMD5Q9GZQ3 224 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 SLIRPQ9GZT3 109 aaKnown RBP10.88□□□□□ -0.67
PNKP-223ENST00000629179 FBXL7Q9UJT9 491 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 ZNF256Q9Y2P7 627 aaPredicted RBP10.88□□□□□ -0.67
PNKP-223ENST00000629179 NSG2Q9Y328 171 aa10.88□□□□□ -0.67
PNKP-223ENST00000629179 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.87□□□□□ -0.67
PNKP-223ENST00000629179 TEX50A0A1B0GTY4 177 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 IGLC7A0M8Q6 106 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 NDUFB8O95169 186 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 RAB3DO95716 219 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 TBPP20226 339 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 TAS2R19P59542 299 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 MRPS10P82664 201 aaKnown RBP10.87□□□□□ -0.67
PNKP-223ENST00000629179 RPEL1Q2QD12 228 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 STEAP1BQ6NZ63 245 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 HAPLN4Q86UW8 402 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 ARRDC1Q8N5I2 433 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 OR10W1Q8NGF6 305 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 ELOVL1Q9BW60 279 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 S4R3C0 116 aa10.87□□□□□ -0.67
PNKP-223ENST00000629179 BMPR1BO00238 502 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 IGKV1-39P01597 117 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 IGHV3-23P01764 117 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 IGKV1D-39P04432 117 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 DEFA4P12838 97 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 SPNP16150 400 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 PPP5CP53041 499 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 SSBP1Q04837 148 aaKnown RBP10.86□□□□□ -0.67
PNKP-223ENST00000629179 SCGB2B2Q4G0G5 96 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 FAAP20Q6NZ36 180 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 OR1L8Q8NGR8 309 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 TERB2Q8NHR7 220 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 MCFD2Q8NI22 146 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 SMIM4Q8WVI0 70 aa10.86□□□□□ -0.67
PNKP-223ENST00000629179 QTRT1Q9BXR0 403 aaKnown RBP10.86□□□□□ -0.67
PNKP-223ENST00000629179 FAM212BQ9NTI7 297 aaPredicted RBP10.86□□□□□ -0.67
PNKP-223ENST00000629179 LSM4Q9Y4Z0 139 aaKnown RBP10.86□□□□□ -0.67
PNKP-223ENST00000629179 COL7A1Q02388 2944 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 IGLV11-55A0A075B6I3 123 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 CCDC160A6NGH7 325 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 PPP5D1E7EU14 171 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 CTDSPLO15194 276 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 SNAPC5O75971 98 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 DHFRP00374 187 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 FGF2P09038 288 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 TRAPPC2P0DI81 140 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 TRAPPC2BP0DI82 140 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 TNFSF8P32971 234 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 PIGPP57054 158 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 RND3P61587 244 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 KLK9Q2XQG4 91 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 IL34Q6ZMJ4 242 aa10.85□□□□□ -0.67
PNKP-223ENST00000629179 CADM3Q8N126 398 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms