RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PPIAL4EA0A075B759 164 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 LOC102723971A0A1B0GUV8 181 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 PPIAL4DF5H284 164 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 SOX15O60248 233 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 CIDEAO60543 219 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 PPIAL4FP0DN26 164 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 NHLH1Q02575 133 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 TEX36Q5VZQ5 186 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 TMEM170AQ8WVE7 144 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 CIB3Q96Q77 187 aaPredicted RBP8.71□□□□□ -1.02
CUX1-221ENST00000622516 PFDN5Q99471 154 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 MSRB2Q9Y3D2 182 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 PPIAL4AQ9Y536 164 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 ZFHX3Q15911 3703 aa8.71□□□□□ -1.02
CUX1-221ENST00000622516 TRAV38-1A0A0B4J264 116 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.7□□□□□ -1.02
CUX1-221ENST00000622516 TMEM178BH3BS89 294 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 HSPB1P04792 205 aaKnown RBP8.7□□□□□ -1.02
CUX1-221ENST00000622516 CT45A6P0DMU7 189 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 CT45A5P0DMU8 189 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 CT45A7P0DMV0 189 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 BCL2P10415 239 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RAB4AP20338 218 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RAB7AP51149 207 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RAB5BP61020 215 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 TMEM200BQ69YZ2 307 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 ZNF439Q8NDP4 499 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 OR4S2Q8NH73 311 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 FAM122AQ96E09 287 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 PATZ1Q9HBE1 687 aaKnown RBP8.7□□□□□ -1.02
CUX1-221ENST00000622516 TMEM106BQ9NUM4 274 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 PIEZO1Q92508 2521 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 TCAPO15273 167 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 OR8U8P0C7N1 319 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 CD1BP29016 333 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 ZNF674Q2M3X9 581 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 DPPA3Q6W0C5 159 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 ZNF709Q8N972 641 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 MBD3L1Q8WWY6 194 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 HIPK2Q9H2X6 1198 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RPUSD1Q9UJJ7 312 aaKnown RBP8.7□□□□□ -1.02
CUX1-221ENST00000622516 TCF19Q9Y242 345 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 hADV38S2A0JD32 116 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 OR2C1O95371 312 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RD3LP0DJH9 198 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RBPJQ06330 500 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 KHDC3LQ587J8 217 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 RAB24Q969Q5 203 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 NIPSNAP3BQ9BS92 247 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 EGLN1Q9GZT9 426 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 CTSZQ9UBR2 303 aa8.7□□□□□ -1.02
CUX1-221ENST00000622516 TRAV1-1A0A0B4J248 108 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 NKX6-3A6NJ46 265 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 LY6HO94772 140 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 VDAC2P45880 294 aaPredicted RBP8.69□□□□□ -1.02
CUX1-221ENST00000622516 HABP2Q14520 560 aaPredicted RBP8.69□□□□□ -1.02
CUX1-221ENST00000622516 RNF212Q495C1 297 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 C9orf152Q5JTZ5 239 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 SSMEM1Q8WWF3 244 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 CCL21O00585 134 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 DVL1O14640 695 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 TMPRSS3P57727 454 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 GNB2P62879 340 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 FAM90A2PQ658T7 463 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 MOB3BQ86TA1 216 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 C15orf54Q8N8G6 183 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 MS4A5Q9H3V2 200 aa8.69□□□□□ -1.02
CUX1-221ENST00000622516 SEBOXQ9HB31 216 aaPredicted RBP8.69□□□□□ -1.02
CUX1-221ENST00000622516 LY86O95711 162 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 KIAA0141Q14154 515 aaPredicted RBP8.68□□□□□ -1.02
CUX1-221ENST00000622516 RHEBQ15382 184 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 ATP6V1FQ16864 119 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 SLC25A48Q6ZT89 311 aaKnown RBP8.68□□□□□ -1.02
CUX1-221ENST00000622516 Q8N7P7 452 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 OR13D1Q8NGV5 346 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 RPUSD4Q96CM3 377 aaKnown RBP8.68□□□□□ -1.02
CUX1-221ENST00000622516 ZNF714Q96N38 554 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 VKORC1Q9BQB6 163 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 MRPL20Q9BYC9 149 aaKnown RBP8.68□□□□□ -1.02
CUX1-221ENST00000622516 SLC35D1Q9NTN3 355 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 CISD1Q9NZ45 108 aaKnown RBP8.68□□□□□ -1.02
CUX1-221ENST00000622516 C15orf61A6NNL5 157 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 UBE2CO00762 179 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 RBFOX2O43251 390 aaKnown RBP eCLIP8.68□□□□□ -1.026e-7■■■□□ 18.3
CUX1-221ENST00000622516 CD81P60033 236 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 UBE2G2P60604 165 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 MLANAQ16655 118 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 NCMAPQ5T1S8 102 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 TREML4Q6UXN2 200 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 TMEM204Q9BSN7 226 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 SMDT1Q9H4I9 107 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 LINC00312Q9Y6C7 94 aa8.68□□□□□ -1.02
CUX1-221ENST00000622516 J3KRW8 73 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 SIAH2O43255 324 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 RAB5AP20339 215 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 THBS3P49746 956 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 MIC13Q5XKP0 118 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 TVP23CQ96ET8 276 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 OR51B2Q9Y5P1 312 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 C5orf52A6NGY3 159 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms