RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TMEM218A2RU14 115 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 HBE1P02100 147 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 LOXL3P58215 753 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 CYB5BO43169 146 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 SOHLH1Q5JUK2 328 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 MYO9AB2RTY4 2548 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 REG4Q9BYZ8 158 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 SETD2Q9BYW2 2564 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-213ENST00000620219 TOX4O94842 621 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 MAPK1IP1LQ8NDC0 245 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 NKX6-2Q9C056 277 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-213ENST00000620219 MT-CO2P00403 227 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 IGLV2-14P01704 120 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 SEC11BP0C7V7 166 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 DPM3Q9P2X0 92 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 UMAD1C9J7I0 102 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 SAT2Q96F10 170 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-213ENST00000620219 SMIM8Q96KF7 97 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 AGMATQ9BSE5 352 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 CACFD1Q9UGQ2 172 aa12.87□□□□□ -0.35
CPSF1-213ENST00000620219 CT45A6P0DMU7 189 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 CT45A5P0DMU8 189 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 CT45A7P0DMV0 189 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 CD1BP29016 333 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 KIAA0141Q14154 515 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 SP5Q6BEB4 398 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 SLC25A48Q6ZT89 311 aaKnown RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 OR10G4Q8NGN3 311 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 OR10G9Q8NGN4 311 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 OR10G7Q8NGN6 311 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 C5orf30Q96GV9 206 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 ARV1Q9H2C2 271 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 TAS2R30P59541 319 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 KDF1Q8NAX2 398 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 RPH3ALQ9UNE2 315 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 FAM90A26D6RGX4 464 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 OR7C2O60412 319 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 RPL27AP46776 148 aaKnown RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 RAB5CP51148 216 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 IGKV1D-33P01593 117 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 IGKV1-33P01594 117 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 ACOT6Q3I5F7 207 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 OR10W1Q8NGF6 305 aa12.86□□□□□ -0.35
CPSF1-213ENST00000620219 ACTR3CQ9C0K3 210 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-213ENST00000620219 MAP1LC3B2A6NCE7 125 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 LYL1P12980 280 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 MMP9P14780 707 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 TMEM155Q4W5P6 130 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 CBLN2Q8IUK8 224 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 FAM103A1Q9BTL3 118 aaKnown RBP12.85□□□□□ -0.35
CPSF1-213ENST00000620219 TMUB1Q9BVT8 246 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 MAP1LC3BQ9GZQ8 125 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 ABCA2Q9BZC7 2435 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 RBP4P02753 201 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 ARL16Q0P5N6 197 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 TMEM30BQ3MIR4 351 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 RARRES2Q99969 163 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 TIMM23O14925 209 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 CA2P00918 260 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 FAM157CP0CG43 387 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 HCFC1P51610 2035 aa12.85□□□□□ -0.35
CPSF1-213ENST00000620219 FOXH1O75593 365 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 IL34Q6ZMJ4 242 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 TAF15Q92804 592 aaKnown RBP eCLIP12.84□□□□□ -0.35
CPSF1-213ENST00000620219 A8MXK9 166 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 C22orf46C9J442 243 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 FBP1P09467 338 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 LY6EQ16553 131 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 DHRS7BQ6IAN0 325 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-213ENST00000620219 RAB19A4D1S5 217 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 BRS3P32247 399 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 ACSM6Q6P461 480 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 OSR1Q8TAX0 266 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-213ENST00000620219 USP24Q9UPU5 2620 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 SNAPINO95295 136 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 RPUSD4Q96CM3 377 aaKnown RBP12.84□□□□□ -0.35
CPSF1-213ENST00000620219 GNB4Q9HAV0 340 aa12.84□□□□□ -0.35
CPSF1-213ENST00000620219 A0A0U1RQK1 487 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 DANCRP0C864 163 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 USF1P22415 310 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-213ENST00000620219 PAX9P55771 341 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 ATP6V1FQ16864 119 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 PARP11Q9NR21 331 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 S4R3C0 116 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 TACC2O95359 2948 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 SPP1P10451 314 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 TFF3Q07654 80 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 ECSCRQ19T08 205 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 MIC13Q5XKP0 118 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 A0A1W2PN81 502 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 RRHO14718 337 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 CHRNA7P36544 502 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 RBMS3Q6XE24 437 aaKnown RBP12.83□□□□□ -0.36
CPSF1-213ENST00000620219 PUSL1Q8N0Z8 303 aaKnown RBP12.83□□□□□ -0.36
CPSF1-213ENST00000620219 OR4F5Q8NH21 305 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 OR4F4Q96R69 305 aa12.83□□□□□ -0.36
CPSF1-213ENST00000620219 ORM2P19652 201 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 CCDC144NLQ6NUI1 221 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 LHFPL4Q7Z7J7 247 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms