RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SMIM21Q3B7S5 101 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 Q6ZVH6 145 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 OR10G4Q8NGN3 311 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 OR4C12Q96R67 309 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 PAGE4O60829 102 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 CTXN2P0C2S0 81 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 IL3RAP26951 378 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 PRDX2P32119 198 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 CDKN1AP38936 164 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 NBL1P41271 181 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 NMSQ5H8A3 153 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 SP5Q6BEB4 398 aaPredicted RBP12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 RBMXL3Q8N7X1 1067 aaKnown RBP12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 ZDHHC16Q969W1 377 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM204Q9BSN7 226 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 FAM215AQ9Y5M1 114 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 C17orf98A8MV24 154 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV1D-33P01593 117 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV1-33P01594 117 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 BRS3P32247 399 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 CMTM2Q8TAZ6 248 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 HSPB9Q9BQS6 159 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 CXXC4Q9H2H0 198 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM30CPA0ZSE6 113 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 FCGR3BO75015 233 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 ARL6IP6Q8N6S5 226 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM56Q96MV1 263 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM56-RWDD3S4R434 201 aa12.05□□□□□ -0.48
SHROOM1-208ENST00000617339 SPINT2O43291 252 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV1-39P01597 117 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV1D-39P04432 117 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 RPL39P5Q59GN2 51 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 COA6Q5JTJ3 125 aaKnown RBP12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 C11orf53Q8IXP5 236 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNF709Q8N972 641 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 COQ2Q96H96 371 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 CCL13Q99616 98 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 RNF24Q9Y225 148 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 POLQO75417 2590 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 PKD1L2Q7Z442 2459 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 S1PR2O95136 353 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 KCNIP4Q6PIL6 250 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNF497Q6ZNH5 498 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 SAXO1Q8IYX7 474 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 RPP25LQ8N5L8 163 aaKnown RBP12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 CD177Q8N6Q3 437 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ZCCHC14Q8WYQ9 949 aaKnown RBP12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 VAMP8Q9BV40 100 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 PKIBQ9C010 78 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 SETD2Q9BYW2 2564 aaPredicted RBP12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 COL27A1Q8IZC6 1860 aaPredicted RBP12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 TRAV1-1A0A0B4J248 108 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 KIR2DL5BA0A0G2JN68 375 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 KIR2DL5BA0A0G2JPC4 375 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 TMPRSS3P57727 454 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ACP7Q6ZNF0 438 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 KIR2DL5AQ8N109 375 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNF525Q8N782 197 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 SAMD10Q9BYL1 202 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 RNF115Q9Y4L5 304 aa12.04□□□□□ -0.48
SHROOM1-208ENST00000617339 ENSAO43768 121 aaKnown RBP12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV3-15P01624 115 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 COL8A2P25067 703 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 RAB7AP51149 207 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 MMDQ15546 238 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 TBR1Q16650 682 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 P2RX4Q99571 388 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 DCHS2Q6V1P9 2916 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 IQCF6A8MYZ5 107 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 M0QZK8 103 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 GGCTO75223 188 aaKnown RBP12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 IGKV1-5P01602 117 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 KRTDAPP60985 99 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 PYGO2Q9BRQ0 406 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 CHRNB4P30926 498 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 DLX1P56177 255 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 HAPLN4Q86UW8 402 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNF295-AS1Q8N0V1 137 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 MBD3L1Q8WWY6 194 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 PLSCR2Q9NRY7 297 aa12.03□□□□□ -0.48
SHROOM1-208ENST00000617339 M0R1X1 148 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 SYNGR2O43760 224 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 C1QTNF9P0C862 333 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 UCP1P25874 307 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 ADMP35318 185 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 DERL1Q9BUN8 251 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 PLSCR4Q9NRQ2 329 aa12.02□□□□□ -0.48
SHROOM1-208ENST00000617339 CLEC18AA5D8T8 446 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 THBS3P49746 956 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 KRTCAP3Q53RY4 240 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 Q6ZWC4 215 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 CLEC18CQ8NCF0 446 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 BTF3L4Q96K17 158 aa12.02□□□□□ -0.49
SHROOM1-208ENST00000617339 PDLIM4P50479 330 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 PTTG1IPP53801 180 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 RNASE8Q8TDE3 154 aaKnown RBP12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 MIEN1Q9BRT3 115 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 SPINK4O60575 86 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 CBLN1P23435 193 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 MZT1Q08AG7 82 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms