RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, human

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE3-208	ENST00000614678	WFDC10A	Q9H1F0	79 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	C5orf66	Q9H5L9	145 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	VSIG4	Q9Y279	399 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	BMPR1B	O00238	502 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	CRIP2	P52943	208 aa	Predicted RBP	4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	ZNF616	Q08AN1	781 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	MEF2D	Q14814	521 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	ARL6IP1	Q15041	203 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	C15orf32	Q32M92	178 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	STEAP1B	Q6NZ63	245 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	OR4S2	Q8NH73	311 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	TMEM230	Q96A57	120 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	TSC22D3	Q99576	134 aa		4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	NXF2	Q9GZY0	626 aa	Known RBP	4.36	□□□□□ -1.71
CPNE3-208	ENST00000614678	TEX50	A0A1B0GTY4	177 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	MPPED1	O15442	326 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RBBP9	O75884	186 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RAB3D	O95716	219 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	F2R	P25116	425 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	VMA21	Q3ZAQ7	101 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	UNQ9165/PRO28630	Q6UXU0	137 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	TEX45	Q8NA69	505 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	TMEM167A	Q8TBQ9	72 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	SMIM4	Q8WVI0	70 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	TRIM63	Q969Q1	353 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	SEC22A	Q96IW7	307 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RSRP1	Q9BUV0	290 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	QTRT1	Q9BXR0	403 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	GHITM	Q9H3K2	345 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	ZFP57	Q9NU63	452 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	PRELID3B	Q9Y3B1	194 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	FABP12	A6NFH5	140 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	GPR31	O00270	319 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	OR2C1	O95371	312 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	LGALS1	P09382	135 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	ECI1	P42126	302 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RPL8	P62917	257 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RNASE10	Q5GAN6	216 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	MZT2A	Q6P582	158 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	CCDC59	Q9P031	241 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	MRPL36	Q9P0J6	103 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RSL24D1	Q9UHA3	163 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678		A0A0B4J293	547 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	UPK2	O00526	184 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	SAP30	O75446	220 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	CD74	P04233	296 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	OR5AC1	P0C628	307 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	SPN	P16150	400 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	HLA-G	P17693	338 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RCVRN	P35243	200 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	MYCNOS	P40205	109 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RPL27A	P46776	148 aa	Known RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	CLEC19A	Q6UXS0	136 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	AP3S1	Q92572	193 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	RNF5	Q99942	180 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	MCUB	Q9NWR8	336 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	FLVCR2	Q9UPI3	526 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	GABARAP	H6UMI1	98 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	SPDEF	O95238	335 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	CBX5	P45973	191 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	CCR6	P51684	374 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	TAS2R46	P59540	309 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	VAX1	Q5SQQ9	334 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	ZNF66	Q6ZN08	573 aa		4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	THAP7	Q9BT49	309 aa	Predicted RBP	4.35	□□□□□ -1.71
CPNE3-208	ENST00000614678	TRBV9	A0A0B4J1U6	114 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678		F8W735	103 aa	Predicted RBP	4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	ZNF207	O43670	478 aa	Known RBP	4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	HPRT1	P00492	218 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	OR13C7	P0DN81	318 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	CTRB1	P17538	263 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	ETV6	P41212	452 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	SUPT4H1	P63272	117 aa	Known RBP	4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	CNPY1	Q3B7I2	92 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	CTRB2	Q6GPI1	263 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	DPF1	Q92782	380 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	GAR1	Q9NY12	217 aa	Known RBP	4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	FBXL7	Q9UJT9	491 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	IGHV3OR16-13	A0A075B7E8	117 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	IGHV3-49	A0A0A0MS15	119 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	IGHV3-74	A0A0B4J1X5	117 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	LINC01619	G3V211	115 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	ACTL6B	O94805	426 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	NQO2	P16083	231 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	EGFEM1P	Q0D2K5	195 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	PYDC2	Q56P42	97 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	TERB2	Q8NHR7	220 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	GLYATL2	Q8WU03	294 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	ADTRP	Q96IZ2	230 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	SCPEP1	Q9HB40	452 aa		4.34	□□□□□ -1.71
CPNE3-208	ENST00000614678	ANKRD20A5P	A0PJZ0	165 aa		4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	OVOL1	O14753	267 aa		4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	UBE2M	P61081	183 aa	Known RBP	4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	TMEM267	Q0VDI3	215 aa	Predicted RBP	4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	EXOSC2	Q13868	293 aa	Known RBP	4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	CCDC190	Q86UF4	302 aa		4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	MMD2	Q8IY49	270 aa		4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	TTC9C	Q8N5M4	171 aa		4.34	□□□□□ -1.72
CPNE3-208	ENST00000614678	CHRDL1	Q9BU40	450 aa		4.34	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms