RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CADM3Q8N126 398 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 KLK15Q9H2R5 256 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 ZFP57Q9NU63 452 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 VWFP04275 2813 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 HLA-GP17693 338 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 SP6Q3SY56 376 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 OR5M8Q8NGP6 311 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 TMEM230Q96A57 120 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 SEC22AQ96IW7 307 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 TMEM68Q96MH6 324 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 PHB2Q99623 299 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 NAA60Q9H7X0 242 aa12.92□□□□□ -0.34
CCDC28A-202ENST00000611852 TEX13DA0A0J9YY54 714 aaPredicted RBP12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 FAM240BA0A1B0GVZ2 78 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 NAP1L6A6NFF2 107 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 CRYM-AS1A6NIL9 109 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 B3GALNT1O75752 331 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 FGF2P09038 288 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 APELAP0DMC3 54 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 PF4V1P10720 104 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 UCP1P25874 307 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 TMEM65Q6PI78 240 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 ADAD2Q8NCV1 583 aaKnown RBP12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 MYOZ3Q8TDC0 251 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 SPIN2AQ99865 258 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 SPIN2BQ9BPZ2 258 aa12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 SLC25A21Q9BQT8 299 aaPredicted RBP12.91□□□□□ -0.34
CCDC28A-202ENST00000611852 PKD1L1Q8TDX9 2849 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 A0A1B0GW64 132 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 E7EUB6 86 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 OR5AC1P0C628 307 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 MYOD1P15172 320 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 SPNP16150 400 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 RPL27AP46776 148 aaKnown RBP12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 RAB9AP51151 201 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 CCR6P51684 374 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 KIAA0141Q14154 515 aaPredicted RBP12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 C18orf65Q6ZTR6 163 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 OR5T1Q8NG75 326 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 CASTOR1Q8WTX7 329 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 GLYATL2Q8WU03 294 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 TMEM222Q9H0R3 208 aa12.9□□□□□ -0.34
CCDC28A-202ENST00000611852 TEX22C9J3V5 150 aa12.89□□□□□ -0.35
CCDC28A-202ENST00000611852 OR9G9P0C7N8 305 aa12.89□□□□□ -0.35
CCDC28A-202ENST00000611852 CDX1P47902 265 aaPredicted RBP12.89□□□□□ -0.35
CCDC28A-202ENST00000611852 OR4F17Q8NGA8 305 aa12.89□□□□□ -0.35
CCDC28A-202ENST00000611852 OR4F4Q96R69 305 aa12.89□□□□□ -0.35
CCDC28A-202ENST00000611852 HMX3A6NHT5 357 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 CGB1A6NKQ9 187 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 CDS2O95674 445 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 AKR1C4P17516 323 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 BTCP35070 178 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 OR2B8PP59922 312 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 RBMS2Q15434 407 aaKnown RBP12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 PLET1Q6UQ28 207 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 TREML4Q6UXN2 200 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 H2BFWTQ7Z2G1 175 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 ZNF695Q8IW36 515 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 SGPP2Q8IWX5 399 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 ZNF491Q8N8L2 437 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 KLHL30-AS1Q8NEE0 82 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 FAM110DQ8TAY7 271 aaPredicted RBP12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 GALNT14Q96FL9 552 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 UBE2E2Q96LR5 201 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 FYTTD1Q96QD9 318 aaKnown RBP12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 COMMD5Q9GZQ3 224 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 NSG2Q9Y328 171 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 MGAM2Q2M2H8 2515 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 NUDT19A8MXV4 375 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 H3BUA1 57 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 SNAPC5O75971 98 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 IGKV1-5P01602 117 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 SLC6A1P30531 599 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 SUPT4H1P63272 117 aaKnown RBP12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 DHODHQ02127 395 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 TMED4Q7Z7H5 227 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 LHFPL5Q8TAF8 219 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 MS4A10Q96PG2 267 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 SLA2Q9H6Q3 261 aa12.88□□□□□ -0.35
CCDC28A-202ENST00000611852 ATG12O94817 140 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 NDUFB6O95139 128 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 BRI3O95415 125 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 P0C879 139 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM128Q5BJH2 165 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 C8orf86Q6ZUL3 223 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 TTC9CQ8N5M4 171 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 DUSP18Q8NEJ0 188 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 ZNF355PQ9NSJ1 428 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM14BQ9NUH8 114 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 COA4Q9NYJ1 87 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 PRNDQ9UKY0 176 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 KCNIP3Q9Y2W7 256 aa12.87□□□□□ -0.35
CCDC28A-202ENST00000611852 TEX50A0A1B0GTY4 177 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 DBX1A6NMT0 343 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 C15orf61A6NNL5 157 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 AKR1C2P52895 323 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 TPPP2P59282 170 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM187Q14656 261 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 IZUMO4Q1ZYL8 232 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 C4orf3Q8WVX3 66 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms