RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 DPPA3Q6W0C5 159 aa13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 RAB1CQ92928 201 aa13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 NEIL1Q96FI4 390 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 CLCC1Q96S66 551 aa13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 MIOXQ9UGB7 285 aa13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 OR51B2Q9Y5P1 312 aa13.83□□□□□ -0.2
SHKBP1-216ENST00000598201 IGHV2-26A0A0B4J1V2 119 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 C22orf46C9J442 243 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 NDUFS7O75251 213 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 LY86O95711 162 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 MDKP21741 143 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 FGF7P21781 194 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 ELLP55199 621 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 SERF2P84101 59 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 FAM71F2Q6NXP2 309 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 SSX7Q7RTT5 188 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 LFNGQ8NES3 379 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 HARBI1Q96MB7 349 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 RARRES2Q99969 163 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 UBTD1Q9HAC8 227 aa13.82□□□□□ -0.2
SHKBP1-216ENST00000598201 PRSS46E5RG02 174 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 OPN1MWP04001 364 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 OPN1MW2P0DN77 364 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 OPN1MW3P0DN78 364 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 PPT1P50897 306 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 TLE4Q04727 773 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 TMEM177Q53S58 311 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 CENPVQ7Z7K6 275 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 SVBPQ8N300 66 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 C8orf46Q8TAG6 207 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 OSR1Q8TAX0 266 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 TIMD4Q96H15 378 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 NKX6-2Q9C056 277 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 PRNDQ9UKY0 176 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 CRYBG3Q68DQ2 2970 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 PTPN13Q12923 2485 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 PCP4L1A6NKN8 68 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 IGKV1D-33P01593 117 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 IGKV1-33P01594 117 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 PEA15Q15121 130 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 ACSM6Q6P461 480 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 ETV3LQ6ZN32 361 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 TGIF2LXQ8IUE1 241 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 LHX4Q969G2 390 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 FLYWCH2Q96CP2 140 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 HINT2Q9BX68 163 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 BET1LQ9NYM9 111 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 TIMM9Q9Y5J7 89 aa13.81□□□□□ -0.2
SHKBP1-216ENST00000598201 NUPL2O15504 423 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 EIF3GO75821 320 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 KBTBD11O94819 623 aa13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 GOSR1O95249 250 aa13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 IGLV1-47P01700 117 aa13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 RPP30P78346 268 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 LY6G5BQ8NDX9 201 aa13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 RCC1LQ96I51 464 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 CHODLQ9H9P2 273 aa13.8□□□□□ -0.2
SHKBP1-216ENST00000598201 TEX50A0A1B0GTY4 177 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 A0A1B0GW64 132 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 TSPAN4O14817 238 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 RAB2AP61019 212 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 TMEM41BQ5BJD5 291 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 RITA1Q96K30 269 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 PBDC1Q9BVG4 233 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 NPCDR1Q9BY65 106 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 ZNF257Q9Y2Q1 563 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 BTBD17A6NE02 478 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 FAM74A7A6NL05 159 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 ARHGAP32A7KAX9 2087 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 CD1BP29016 333 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 HLA-DRB5Q30154 266 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 FAM74A3Q4VXF1 159 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 ZNF787Q6DD87 383 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 PDPNQ86YL7 162 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 Q8N7P7 452 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 OR4C13Q8NGP0 309 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 KIAA1456Q9P272 454 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 WASHC3Q9Y3C0 194 aa13.79□□□□□ -0.2
SHKBP1-216ENST00000598201 TACC2O95359 2948 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 IGHV3-72A0A0B4J1Y9 119 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 TRAV1-1A0A0B4J248 108 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 RBFOX3A6NFN3 312 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 DNASE2O00115 360 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 CA2P00918 260 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 IGLV2-23P01705 113 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 COX7A1P24310 79 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 NPBWR1P48145 328 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 PRCDQ00LT1 54 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 LCN15Q6UWW0 184 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 RPP25LQ8N5L8 163 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 SLC24A4Q8NFF2 622 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 PCGF1Q9BSM1 259 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 CLEC7AQ9BXN2 247 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 PATZ1Q9HBE1 687 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 ONECUT1Q9UBC0 465 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 WDR83OSQ9Y284 106 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 A0A1W2PPH5 198 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 RBP4P02753 201 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 IFNA4P05014 189 aa13.78□□□□□ -0.2
SHKBP1-216ENST00000598201 HAGHQ16775 308 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms