RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NDUFA3O95167 84 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 TSPAN15O95858 294 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 IFNA21P01568 189 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 AMY1AP04745 511 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 RNASE1P07998 156 aaKnown RBP7.48□□□□□ -1.21
TRIM28-208ENST00000597172 SLC25A6P12236 298 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 AKR1C2P52895 323 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 RELBQ01201 579 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 PJVKQ0ZLH3 352 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 IL15RAQ13261 267 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 H2BFWTQ7Z2G1 175 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 TMEM219Q86XT9 240 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 FAM219AQ8IW50 185 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 Q8N9W7 124 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 OR5M8Q8NGP6 311 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 RRNAD1Q96FB5 475 aaKnown RBP7.48□□□□□ -1.21
TRIM28-208ENST00000597172 RBM14Q96PK6 669 aaKnown RBP7.48□□□□□ -1.21
TRIM28-208ENST00000597172 OR2A7Q96R45 310 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 AIFM2Q9BRQ8 373 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 FBXL15Q9H469 300 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 BET1LQ9NYM9 111 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 NSG2Q9Y328 171 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 SIGLEC9Q9Y336 463 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 PIGBOS1A0A0B4J2F0 54 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 A0A1B0GU03 582 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 C5orf51A6NDU8 294 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 FAM25EA8MYX2 175 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 NBR2O15453 112 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 HOXA3O43365 443 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 KBTBD11O94819 623 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 OR2F2O95006 317 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 SPDEFO95238 335 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 MYOD1P15172 320 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 ERVK-16P61578 105 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 SSBP2P81877 361 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 MMDQ15546 238 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 PRSS8Q16651 343 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 C5orf64Q2M2E5 130 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 IAH1Q2TAA2 248 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 VMA21Q3ZAQ7 101 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 GSG1LQ6UXU4 331 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 FAM71E2Q8N5Q1 922 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 OR8H1Q8NGG4 311 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 OR4D5Q8NGN0 318 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 TMEM167AQ8TBQ9 72 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 C2orf50Q96LR7 162 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 SLC25A33Q9BSK2 321 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 RANBP3Q9H6Z4 567 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 ZNF430Q9H8G1 570 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 METTL1Q9UBP6 276 aaKnown RBP7.47□□□□□ -1.21
TRIM28-208ENST00000597172 CACNG5Q9UF02 275 aa7.47□□□□□ -1.21
TRIM28-208ENST00000597172 NCBP2LA6PVI3 153 aaKnown RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 E7EUB6 86 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 CHST1O43916 411 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 TRAPPC2P0DI81 140 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 TRAPPC2BP0DI82 140 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 ID3Q02535 119 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 SMCO1Q147U7 214 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 AARDQ4LEZ3 155 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 CXorf66Q5JRM2 361 aaPredicted RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 SAMD5Q5TGI4 173 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 PPP1R27Q86WC6 154 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 C5orf56Q8N8D9 126 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 ZBTB8BQ8NAP8 495 aaPredicted RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 OR4A5Q8NH83 315 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 OR5R1Q8NH85 324 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 RNASE11Q8TAA1 199 aaKnown RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 VSTM2AQ8TAG5 236 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 SSMEM1Q8WWF3 244 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 ST6GAL2Q96JF0 529 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 CLCC1Q96S66 551 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 QTRT1Q9BXR0 403 aaKnown RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 CHIAQ9BZP6 476 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 NMES1Q9C002 83 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 ZNF436Q9C0F3 470 aaPredicted RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 TNFRSF19Q9NS68 423 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.46□□□□□ -1.22
TRIM28-208ENST00000597172 TMEM14BQ9NUH8 114 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 COA4Q9NYJ1 87 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 C1RLQ9NZP8 487 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 GSKIPQ9P0R6 139 aa7.46□□□□□ -1.22
TRIM28-208ENST00000597172 TEX50A0A1B0GTY4 177 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 A0A1B0GW64 132 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 SH2D7A6NKC9 451 aaPredicted RBP7.45□□□□□ -1.22
TRIM28-208ENST00000597172 CGB1A6NKQ9 187 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 C15orf61A6NNL5 157 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 ST8SIA3O43173 380 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 OR2B8PP59922 312 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 RPL8P62917 257 aaKnown RBP7.45□□□□□ -1.22
TRIM28-208ENST00000597172 BLCAPP62952 87 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 CD83Q01151 205 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 CD300CQ08708 224 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 Q5BKY6 102 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 ZNF429Q86V71 674 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 FOXRED2Q8IWF2 684 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 TMEM86BQ8N661 226 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 OR4A16Q8NH70 328 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 NEURL2Q9BR09 285 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 RANGRFQ9HD47 186 aaPredicted RBP7.45□□□□□ -1.22
TRIM28-208ENST00000597172 KIAA1456Q9P272 454 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms