RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR52I2Q8NH67 350 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 DGCR14Q96DF8 476 aaKnown RBP11.58□□□□□ -0.56
TRIM28-205ENST00000595028 CCDC59Q9P031 241 aaKnown RBP11.58□□□□□ -0.56
TRIM28-205ENST00000595028 PEF1Q9UBV8 284 aaKnown RBP11.58□□□□□ -0.56
TRIM28-205ENST00000595028 TRAV3A0A0B4J244 114 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 MARCH11A6NNE9 402 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 M0QYG6 137 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 OR2J3O76001 311 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 FGF2P09038 288 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 AREGP15514 252 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 RPL5P46777 297 aaKnown RBP11.57□□□□□ -0.56
TRIM28-205ENST00000595028 OR2B8PP59922 312 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 ERVK-16P61578 105 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 ATP5G2Q06055 141 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 PHLDA2Q53GA4 152 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 NECAP1Q8NC96 275 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 OR6Q1Q8NGQ2 317 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 C15orf40Q8WUR7 153 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 OR4C12Q96R67 309 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 ABHD1Q96SE0 405 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 RSRP1Q9BUV0 290 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 KLK11Q9UBX7 282 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 MTFP1Q9UDX5 166 aa11.57□□□□□ -0.56
TRIM28-205ENST00000595028 LSM4Q9Y4Z0 139 aaKnown RBP11.57□□□□□ -0.56
TRIM28-205ENST00000595028 CGB1A6NKQ9 187 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 RGS5O15539 181 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 CRYGCP07315 174 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 RPA2P15927 270 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 TBPP20226 339 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 PSMB6P28072 239 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 S100GP29377 79 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 LPAR6P43657 344 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 UCP3P55916 312 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 KLF5Q13887 457 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-205ENST00000595028 C15orf32Q32M92 178 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 RNASE10Q5GAN6 216 aaKnown RBP11.56□□□□□ -0.56
TRIM28-205ENST00000595028 LPCAT3Q6P1A2 487 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 SLC38A6Q8IZM9 456 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 DYNC2LI1Q8TCX1 351 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 FCAMRQ8WWV6 532 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 B9D2Q9BPU9 175 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 ELOVL1Q9BW60 279 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 COMMD5Q9GZQ3 224 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 TENM2Q9NT68 2774 aa11.56□□□□□ -0.56
TRIM28-205ENST00000595028 IGLC7A0M8Q6 106 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 CTDSP2O14595 271 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 NOL3O60936 208 aaKnown RBP11.55□□□□□ -0.56
TRIM28-205ENST00000595028 LY86O95711 162 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 DHFRP00374 187 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 CTRB1P17538 263 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 SYNJ2BPP57105 145 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 CD69Q07108 199 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 RPEL1Q2QD12 228 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 KLK9Q2XQG4 91 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 ZNF585BQ52M93 769 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 CTRB2Q6GPI1 263 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 ARRDC1Q8N5I2 433 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 FANCD2OSQ96PS1 177 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 SRSF8Q9BRL6 282 aaKnown RBP11.55□□□□□ -0.56
TRIM28-205ENST00000595028 FAM212BQ9NTI7 297 aaPredicted RBP11.55□□□□□ -0.56
TRIM28-205ENST00000595028 KLK9Q9UKQ9 250 aa11.55□□□□□ -0.56
TRIM28-205ENST00000595028 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.54□□□□□ -0.56
TRIM28-205ENST00000595028 H3BMQ9 156 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 GABARAPH6UMI1 98 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 BMPR1BO00238 502 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 CD3DP04234 171 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 IFNA6P05013 189 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 REG1AP05451 166 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 SPNP16150 400 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 MRPS10P82664 201 aaKnown RBP11.54□□□□□ -0.56
TRIM28-205ENST00000595028 FAM209BQ5JX69 171 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 THOC7Q6I9Y2 204 aaKnown RBP11.54□□□□□ -0.56
TRIM28-205ENST00000595028 TBC1D26Q86UD7 250 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 HAPLN4Q86UW8 402 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 LHFPL1Q86WI0 220 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 CADM3Q8N126 398 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 OR9G4Q8NGQ1 327 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 ISOC1Q96CN7 298 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 QTRT1Q9BXR0 403 aaKnown RBP11.54□□□□□ -0.56
TRIM28-205ENST00000595028 FBXL7Q9UJT9 491 aa11.54□□□□□ -0.56
TRIM28-205ENST00000595028 IGLV11-55A0A075B6I3 123 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 KRASP01116 189 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 IGLV1-51P01701 117 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 CD74P04233 296 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 HIST1H1BP16401 226 aaKnown RBP11.53□□□□□ -0.56
TRIM28-205ENST00000595028 G6PCP35575 357 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 TAS2R19P59542 299 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 SSBP1Q04837 148 aaKnown RBP11.53□□□□□ -0.56
TRIM28-205ENST00000595028 TMEM229BQ8NBD8 167 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 SMIM4Q8WVI0 70 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 CCDC140Q96MF4 163 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 DNAH1Q9P2D7 4330 aa11.53□□□□□ -0.56
TRIM28-205ENST00000595028 NDUFB8O95169 186 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 DEFA4P12838 97 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 GP9P14770 177 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 PGAM2P15259 253 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 PPP5CP53041 499 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 RND3P61587 244 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 TATDN3Q17R31 274 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 IL34Q6ZMJ4 242 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms