RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LILRA1O75019 489 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 MPC2O95563 127 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 ZNF146Q15072 292 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 Q1RN00 199 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 LHFPL4Q7Z7J7 247 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 BAP18Q8IXM2 172 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 OR5C1Q8NGR4 320 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 ATG101Q9BSB4 218 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 NDFIP1Q9BT67 221 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 TMEM222Q9H0R3 208 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 TRAV24A0A0B4J272 114 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 GRNP28799 593 aaKnown RBP8.22□□□□□ -1.09
LIG3-216ENST00000593099 OR4F17Q8NGA8 305 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 OR4F5Q8NH21 305 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 TMED6Q8WW62 240 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 ITLN2Q8WWU7 325 aaPredicted RBP8.22□□□□□ -1.09
LIG3-216ENST00000593099 OR4F4Q96R69 305 aa8.22□□□□□ -1.09
LIG3-216ENST00000593099 TRAV40A0A0B4J280 105 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 IGKV1-12A0A0C4DH73 117 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 LOC102723971A0A1B0GUV8 181 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 CGAP01215 116 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 IGKV1D-12P01611 117 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 ZP1P60852 638 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 LYZP61626 148 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 UBE2G1P62253 170 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 ZNF273Q14593 569 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 DYNLRB2Q8TF09 96 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 SIGMAR1Q99720 223 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 TFF1P04155 84 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 AKR1C3P42330 323 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 ARL16Q0P5N6 197 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 BOD1L2Q8IYS8 172 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 OR1L4Q8NGR5 311 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 IL22RA2Q969J5 263 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 GSX1Q9H4S2 264 aaPredicted RBP8.21□□□□□ -1.09
LIG3-216ENST00000593099 TMEM140Q9NV12 185 aa8.21□□□□□ -1.09
LIG3-216ENST00000593099 TMEM131Q92545 1883 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 CT45A10P0DMU9 189 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 RPL39P5Q59GN2 51 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 ZNF788Q6ZQV5 615 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 P2RX4Q99571 388 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 GINS3Q9BRX5 216 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 TMEM208Q9BTX3 173 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 NPFFR1Q9GZQ6 430 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 PARP12Q9H0J9 701 aaKnown RBP8.21□□□□□ -1.1
LIG3-216ENST00000593099 XKRY2A2RUG3 117 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 RNF223E7ERA6 249 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 CORTO00230 105 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 KBTBD11O94819 623 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 SELLP14151 372 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 ZNF497Q6ZNH5 498 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 FGFRL1Q8N441 504 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 LINC01356Q8N9X3 169 aa8.21□□□□□ -1.1
LIG3-216ENST00000593099 OSR1Q8TAX0 266 aaPredicted RBP8.21□□□□□ -1.1
LIG3-216ENST00000593099 ZNF106Q9H2Y7 1883 aaKnown RBP8.21□□□□□ -1.1
LIG3-216ENST00000593099 KCNAB3O43448 404 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 YPEL1O60688 119 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 IGKV1D-33P01593 117 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 IGKV1-33P01594 117 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 FXYD3Q14802 87 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 PDPNQ86YL7 162 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 YPEL2Q96QA6 119 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 AAMDCQ9H7C9 122 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 RPUSD1Q9UJJ7 312 aaKnown RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 TEX50A0A1B0GTY4 177 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 CXorf65A6NEN9 183 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 LOXL3P58215 753 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 HSPE1P61604 102 aaKnown RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 IZUMO4Q1ZYL8 232 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 NHLRC3Q5JS37 347 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 FAM89BQ8N5H3 189 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 MARCH11A6NNE9 402 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 CD74P04233 296 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 EGR1P18146 543 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 ORM2P19652 201 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 CXorf66Q5JRM2 361 aaPredicted RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 NIT1Q86X76 327 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 DERL1Q9BUN8 251 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 IGKV1-27A0A075B6S5 117 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 NPIPB11E5RHQ5 1161 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 ISLRO14498 428 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 P2RY1P47900 373 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 HSD17B13Q7Z5P4 300 aaPredicted RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 MRPL52Q86TS9 123 aaKnown RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 H1FOOQ8IZA3 346 aaPredicted RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 PSMG3Q9BT73 122 aaPredicted RBP8.2□□□□□ -1.1
LIG3-216ENST00000593099 MED9Q9NWA0 146 aa8.2□□□□□ -1.1
LIG3-216ENST00000593099 C5orf52A6NGY3 159 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 SH2D7A6NKC9 451 aaPredicted RBP8.19□□□□□ -1.1
LIG3-216ENST00000593099 BCL2L11O43521 198 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 COL8A1P27658 744 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 SMAGPQ0VAQ4 97 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 HCP5Q6MZN7 132 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 ZNF818PQ6ZRF7 136 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 SLC35E3Q7Z769 313 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 TMEM37Q8WXS4 190 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 LINC00052Q96N35 136 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 QTRT1Q9BXR0 403 aaKnown RBP8.19□□□□□ -1.1
LIG3-216ENST00000593099 PAM16Q9Y3D7 125 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 ZNF503-AS2A6NEH8 195 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms