RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC25A17O43808 307 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 NMBP08949 121 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 SLC25A16P16260 332 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 PAX6P26367 422 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 CNTFRP26992 372 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 VDAC2P45880 294 aaPredicted RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 HOXA1P49639 335 aaPredicted RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 VMA21Q3ZAQ7 101 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 PDLIM3Q53GG5 364 aaPredicted RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 UBAC2Q8NBM4 344 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 TMEM167AQ8TBQ9 72 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 TMED6Q8WW62 240 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 ATP5SQ99766 215 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 GINS3Q9BRX5 216 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 HINT2Q9BX68 163 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 SLC25A32Q9H2D1 315 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 HEYLQ9NQ87 328 aaPredicted RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 BEX4Q9NWD9 120 aaPredicted RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 ITGB1BP2Q9UKP3 347 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 FBN2P35556 2912 aa8.47□□□□□ -1.05
SS18-217ENST00000580958 TEX50A0A1B0GTY4 177 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 LINC00862A6NCI5 91 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 C15orf62A8K5M9 175 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 FBXO24O75426 580 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 OPN1MWP04001 364 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 FGF2P09038 288 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 OPN1MW2P0DN77 364 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 OPN1MW3P0DN78 364 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 USF1P22415 310 aaPredicted RBP8.46□□□□□ -1.06
SS18-217ENST00000580958 LGALS7P47929 136 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 LGALS4P56470 323 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 PAX8Q06710 450 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 SLC38A11Q08AI6 406 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 ZNF266Q14584 549 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 MINOS1Q5TGZ0 78 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 OR8G2PQ6IF36 304 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 DYNAPQ8N1N2 210 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 STPG2Q8N412 459 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 HSD17B11Q8NBQ5 300 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 OR4A5Q8NH83 315 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 VSTM2AQ8TAG5 236 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 CFHR4Q92496 578 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 CXorf58Q96LI9 332 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 PSMG3-AS1Q96PY0 264 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 TSNAXQ99598 290 aaKnown RBP8.46□□□□□ -1.06
SS18-217ENST00000580958 ENY2Q9NPA8 101 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 TPSG1Q9NRR2 321 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 CACFD1Q9UGQ2 172 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 MINOS1-NBL1R4GNA1 71 aa8.46□□□□□ -1.06
SS18-217ENST00000580958 PMS2P5A8MQ11 134 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 DFFBO76075 338 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 VENTXO95231 258 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 LY86O95711 162 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 CD1BP29016 333 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 UBE2E1P51965 193 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 RPL8P62917 257 aaKnown RBP8.45□□□□□ -1.06
SS18-217ENST00000580958 HBG1P69891 147 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 HBG2P69892 147 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 PRCDQ00LT1 54 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 PSG5Q15238 335 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 SSX2Q16385 188 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 DEFB113Q30KQ7 82 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 EIF5AL1Q6IS14 154 aaKnown RBP8.45□□□□□ -1.06
SS18-217ENST00000580958 THNSL2Q86YJ6 484 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 LILRB2Q8N423 598 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 TEX45Q8NA69 505 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 C17orf50Q8WW18 174 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 HIPK2Q9H2X6 1198 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 ZNF430Q9H8G1 570 aaPredicted RBP8.45□□□□□ -1.06
SS18-217ENST00000580958 PLEKHA3Q9HB20 300 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 FKBP11Q9NYL4 201 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 ZNF257Q9Y2Q1 563 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 TBL2Q9Y4P3 447 aaKnown RBP8.45□□□□□ -1.06
SS18-217ENST00000580958 CELSR2Q9HCU4 2923 aa8.45□□□□□ -1.06
SS18-217ENST00000580958 A0A096LNT2 108 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 OOSP1A8MZH6 123 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 FGF16O43320 207 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 IFNA10P01566 189 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 IFNA5P01569 189 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 CRYGBP07316 175 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 OR8U8P0C7N1 319 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 FAM157CP0CG43 387 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 ATP6V0CP27449 155 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 RPP30P78346 268 aaKnown RBP8.44□□□□□ -1.06
SS18-217ENST00000580958 PJVKQ0ZLH3 352 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 HABP2Q14520 560 aaPredicted RBP8.44□□□□□ -1.06
SS18-217ENST00000580958 MRGPRG-AS1Q2M3A8 158 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 C10orf55Q5SWW7 151 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 CCDC144NLQ6NUI1 221 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 SLC25A24Q6NUK1 477 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 COMMD7Q86VX2 200 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 LRRC75A-AS1Q8N1F1 130 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 OR1L8Q8NGR8 309 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 TMEM170AQ8WVE7 144 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 COMMD5Q9GZQ3 224 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 SH3BGRL3Q9H299 93 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 RFNGQ9Y644 331 aa8.44□□□□□ -1.06
SS18-217ENST00000580958 IGHV3OR16-10A0A075B7F0 116 aa8.43□□□□□ -1.06
SS18-217ENST00000580958 CENPVL3A0A0U1RRI6 287 aa8.43□□□□□ -1.06
SS18-217ENST00000580958 RRHO14718 337 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms