RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF439Q8NDP4 499 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 OR7G1Q8NGA0 311 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 EEF1AKMT1Q8WVE0 214 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 DCUN1D5Q9BTE7 237 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 NDEL1Q9GZM8 345 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 OR5AC2Q9NZP5 309 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 ANAPC10Q9UM13 185 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 KIF24Q5T7B8 1368 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 EIF4G1Q04637 1599 aaKnown RBP0.9□□□□□ -2.27
SS18-214ENST00000580003 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.89□□□□□ -2.27
SS18-214ENST00000580003 TRAV14DV4A0A0A6YYC5 116 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 ERICH2A1L162 156 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 TMEM212A6NML5 194 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 PMP2P02689 132 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 METTL15P1P0C7V9 234 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 POLR2GP62487 172 aaKnown RBP eCLIP0.89□□□□□ -2.27
SS18-214ENST00000580003 FAM78BQ5VT40 261 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 TEX36Q5VZQ5 186 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 RSL24D1Q9UHA3 163 aaKnown RBP0.89□□□□□ -2.27
SS18-214ENST00000580003 AK3Q9UIJ7 227 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 BAIAP2Q9UQB8 552 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 COQ4Q9Y3A0 265 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 SYNRGQ9UMZ2 1314 aa0.89□□□□□ -2.27
SS18-214ENST00000580003 LAMB4A4D0S4 1761 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 C21orf140B9A014 251 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 I3L521 148 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 NDUFS6O75380 124 aaKnown RBP0.88□□□□□ -2.27
SS18-214ENST00000580003 RNASE3P12724 160 aaKnown RBP0.88□□□□□ -2.27
SS18-214ENST00000580003 NFYAP23511 347 aaPredicted RBP0.88□□□□□ -2.27
SS18-214ENST00000580003 S100A7P31151 101 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 CDC34P49427 236 aaPredicted RBP0.88□□□□□ -2.27
SS18-214ENST00000580003 FXYD2P54710 66 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 ZNF345Q14585 488 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 OR1M1Q8NGA1 313 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 OR5B17Q8NGF7 314 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 ANKRD7Q92527 254 aa0.88□□□□□ -2.27
SS18-214ENST00000580003 CHMP4BQ9H444 224 aaKnown RBP0.88□□□□□ -2.27
SS18-214ENST00000580003 IGHV1-69-2A0A0G2JMI3 117 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 IRGMA1A4Y4 181 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 IQCF5A8MTL0 148 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 UGT2B7P16662 529 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 HLA-DMBP28068 263 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 HIST2H3AQ71DI3 136 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 FKBP14Q9NWM8 211 aa0.87□□□□□ -2.27
SS18-214ENST00000580003 HSBP1L1C9JCN9 74 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 KRT75O95678 551 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 RUNX1Q01196 453 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 TNFAIP8L3Q5GJ75 292 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 TNFAIP8L2Q6P589 184 aaPredicted RBP0.86□□□□□ -2.27
SS18-214ENST00000580003 SLC51BQ86UW2 128 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 TMEM251Q8N6I4 163 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 SMIM19Q96E16 107 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 OR8D2Q9GZM6 311 aa0.86□□□□□ -2.27
SS18-214ENST00000580003 KIF15Q9NS87 1388 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 BIRC5O15392 142 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 IL3P08700 152 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 OR4D2P58180 307 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 OR4C6Q8NH72 309 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 AQP3Q92482 292 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 WDR54Q9H977 334 aa0.85□□□□□ -2.27
SS18-214ENST00000580003 NCOA6Q14686 2063 aaPredicted RBP0.84□□□□□ -2.27
SS18-214ENST00000580003 LST1O00453 97 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 IGHV3-7P01780 117 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 SHBGP04278 402 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 C1orf194Q5T5A4 169 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 FUNDC1Q8IVP5 155 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 POLR1DQ9Y2S0 133 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 PXMP4Q9Y6I8 212 aa0.84□□□□□ -2.27
SS18-214ENST00000580003 AHNAK2Q8IVF2 5795 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 A0A087WX48 190 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 GGT3PA6NGU5 568 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 OR4C45A6NMZ5 311 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 GOLGA8MH3BSY2 632 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 NOS1APO75052 506 aaPredicted RBP0.83□□□□□ -2.28
SS18-214ENST00000580003 FABP9Q0Z7S8 132 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 DKKL1Q9UK85 242 aa0.83□□□□□ -2.28
SS18-214ENST00000580003 ALPK2Q86TB3 2170 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 TRBV6-7A0A0A0MS04 114 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 DISC1C4P0D8 188 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 HLA-DRAP01903 254 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 TNFAIP6P98066 277 aaPredicted RBP0.82□□□□□ -2.28
SS18-214ENST00000580003 MGAT3Q09327 533 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 KCTD7Q96MP8 289 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 PAQR5Q9NXK6 330 aaPredicted RBP0.82□□□□□ -2.28
SS18-214ENST00000580003 FUT9Q9Y231 359 aa0.82□□□□□ -2.28
SS18-214ENST00000580003 FUOMA2VDF0 154 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 C1QAP02745 245 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 SRP19P09132 144 aaKnown RBP0.81□□□□□ -2.28
SS18-214ENST00000580003 OCMP0CE72 109 aaPredicted RBP0.81□□□□□ -2.28
SS18-214ENST00000580003 EIF2B2P49770 351 aaKnown RBP0.81□□□□□ -2.28
SS18-214ENST00000580003 PPP1R1AQ13522 171 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 ZNF846Q147U1 533 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 AAED1Q7RTV5 226 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 C10orf67Q8IYJ2 551 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 Q8N402 240 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 ROPN1LQ96C74 230 aa0.81□□□□□ -2.28
SS18-214ENST00000580003 YEATS4O95619 227 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 FGF6P10767 208 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 CCL1P22362 96 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 UBE2IP63279 158 aaKnown RBP0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms