RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DEDDO75618 318 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 EIF2B2P49770 351 aaKnown RBP20■□□□□ 0.79
SHMT1-207ENST00000580002 ARHGDIBP52566 201 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 SSBP2P81877 361 aaPredicted RBP20■□□□□ 0.79
SHMT1-207ENST00000580002 LRRC75BQ2VPJ9 315 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 TNFRSF19Q9NS68 423 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 OR51B2Q9Y5P1 312 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 A0A1B0GW64 132 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 CGB1A6NKQ9 187 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 WRBO00258 174 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 NDUFA3O95167 84 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 PAX9P55771 341 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 BPIFB3P59826 476 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 PRSS8Q16651 343 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 AARDQ4LEZ3 155 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 C9orf139Q6ZV77 190 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 AIFM2Q9BRQ8 373 aa19.99■□□□□ 0.79
SHMT1-207ENST00000580002 FOXA2Q9Y261 457 aaPredicted RBP19.99■□□□□ 0.79
SHMT1-207ENST00000580002 IFNA17P01571 189 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 IGHV4-59P01825 116 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 CD99P14209 185 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 DYNLT3P51808 116 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 RPL8P62917 257 aaKnown RBP19.98■□□□□ 0.79
SHMT1-207ENST00000580002 PRSS54Q6PEW0 395 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 HINT2Q9BX68 163 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 TCF19Q9Y242 345 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 BOLA1Q9Y3E2 137 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 SLC25A4P12235 298 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 GNB1P62873 340 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 CLEC9AQ6UXN8 241 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 PPP1R27Q86WC6 154 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 Q8N9W7 124 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 THAP6Q8TBB0 222 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 DCUN1D4Q92564 292 aa19.98■□□□□ 0.79
SHMT1-207ENST00000580002 MTORP42345 2549 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 MSGN1A6NI15 193 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 SYNGR2O43760 224 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 FGL1Q08830 312 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 PLGLAQ15195 96 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 C5orf64Q2M2E5 130 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 LAMTOR1Q6IAA8 161 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 ZNF429Q86V71 674 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 OR10W1Q8NGF6 305 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 VSTM2AQ8TAG5 236 aa19.97■□□□□ 0.79
SHMT1-207ENST00000580002 H3BP45 60 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 ARPC5O15511 151 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 LYL1P12980 280 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 CXCL2P19875 107 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 SRP14P37108 136 aaKnown RBP19.96■□□□□ 0.79
SHMT1-207ENST00000580002 HSPE1P61604 102 aaKnown RBP19.96■□□□□ 0.79
SHMT1-207ENST00000580002 ZNF546Q86UE3 836 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 OR4A5Q8NH83 315 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 PRNDQ9UKY0 176 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 CUBNO60494 3623 aa19.96■□□□□ 0.79
SHMT1-207ENST00000580002 A6NDX4 124 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 CA2P00918 260 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 TNXAQ16473 311 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 KIAA1456Q9P272 454 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 FAM24AA6NFZ4 105 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 CEBPZOSA8MTT3 80 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 IER3P46695 156 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 LGALSLQ3ZCW2 172 aaPredicted RBP19.95■□□□□ 0.78
SHMT1-207ENST00000580002 BSCL2Q96G97 398 aaPredicted RBP19.95■□□□□ 0.78
SHMT1-207ENST00000580002 HYLS1Q96M11 299 aa19.95■□□□□ 0.78
SHMT1-207ENST00000580002 SPDEFO95238 335 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 APELAP0DMC3 54 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 AP2S1P53680 142 aaPredicted RBP19.94■□□□□ 0.78
SHMT1-207ENST00000580002 SPCS3P61009 180 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 Q6YL49 198 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 RBM14Q96PK6 669 aaKnown RBP19.94■□□□□ 0.78
SHMT1-207ENST00000580002 SLC25A33Q9BSK2 321 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 TNFSF18Q9UNG2 199 aa19.94■□□□□ 0.78
SHMT1-207ENST00000580002 FAM90A26D6RGX4 464 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 RLN2P04090 185 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 AMY1AP04745 511 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 DTD1Q8TEA8 209 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 RNF222A6NCQ9 220 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 VDAC2P45880 294 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-207ENST00000580002 MMD2Q8IY49 270 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 C9orf62Q8N4C0 152 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 SIGLECL1Q8N7X8 197 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 OR52E5Q8NH55 327 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 DUX5Q96PT3 197 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 COMMD5Q9GZQ3 224 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 NDUFA4L2Q9NRX3 87 aa19.93■□□□□ 0.78
SHMT1-207ENST00000580002 HIVEP2P31629 2446 aa19.92■□□□□ 0.78
SHMT1-207ENST00000580002 HSPB9Q9BQS6 159 aa19.92■□□□□ 0.78
SHMT1-207ENST00000580002 FAM103A1Q9BTL3 118 aaKnown RBP19.92■□□□□ 0.78
SHMT1-207ENST00000580002 LINC01548A6NM66 108 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 E5RGE8 158 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 HOXA3O43365 443 aaPredicted RBP19.91■□□□□ 0.78
SHMT1-207ENST00000580002 HKR1P10072 659 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 NDPQ00604 133 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 PDLIM3Q53GG5 364 aaPredicted RBP19.91■□□□□ 0.78
SHMT1-207ENST00000580002 TMEM65Q6PI78 240 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 ZNF257Q9Y2Q1 563 aa19.91■□□□□ 0.78
SHMT1-207ENST00000580002 IGSF23A1L1A6 192 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 L7N2F9 121 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 COMPP49747 757 aaPredicted RBP19.9■□□□□ 0.78
SHMT1-207ENST00000580002 VAMP2P63027 116 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms