RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NSG2Q9Y328 171 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 OR51B2Q9Y5P1 312 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 SONP18583 2426 aaKnown RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 ST8SIA3O43173 380 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 HLA-DRB1P01911 266 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 FAM157CP0CG43 387 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 PET100P0DJ07 73 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 SPCS3P61009 180 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 HSPE1P61604 102 aaKnown RBP8.54□□□□□ -1.04
SS18-213ENST00000579640 ID3Q02535 119 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 C5orf56Q8N8D9 126 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 OR1L8Q8NGR8 309 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 ST6GAL2Q96JF0 529 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 QTRT1Q9BXR0 403 aaKnown RBP8.54□□□□□ -1.04
SS18-213ENST00000579640 RANGRFQ9HD47 186 aaPredicted RBP8.54□□□□□ -1.04
SS18-213ENST00000579640 TPSG1Q9NRR2 321 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 HSPB7Q9UBY9 170 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 CLDN34H7C241 214 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 WRBO00258 174 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 PFDN1O60925 122 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 CRLF1O75462 422 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 LY86O95711 162 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 SCGB1D2O95969 90 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 CA2P00918 260 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 IFNA17P01571 189 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 PSMB6P28072 239 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 TNFRSF9Q07011 255 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 TNXAQ16473 311 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 MRGPRG-AS1Q2M3A8 158 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 ZNF562Q6V9R5 426 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 TCTE3Q8IZS6 198 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 PPP1R1CQ8WVI7 109 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 JMJD8Q96S16 334 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 CELSR1Q9NYQ6 3014 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 SVEP1Q4LDE5 3571 aa8.54□□□□□ -1.04
SS18-213ENST00000579640 TEX50A0A1B0GTY4 177 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 MBPP02686 304 aaPredicted RBP8.53□□□□□ -1.04
SS18-213ENST00000579640 RLN2P04090 185 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 RPL27AP46776 148 aaKnown RBP8.53□□□□□ -1.04
SS18-213ENST00000579640 COMPP49747 757 aaPredicted RBP8.53□□□□□ -1.04
SS18-213ENST00000579640 PRCDQ00LT1 54 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 PJVKQ0ZLH3 352 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 RAB32Q13637 225 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 CXorf66Q5JRM2 361 aaPredicted RBP8.53□□□□□ -1.04
SS18-213ENST00000579640 MRPL41Q8IXM3 137 aaKnown RBP8.53□□□□□ -1.04
SS18-213ENST00000579640 OR2T35Q8NGX2 323 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 CLCC1Q96S66 551 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 NEURL2Q9BR09 285 aa8.53□□□□□ -1.04
SS18-213ENST00000579640 ANK3Q12955 4377 aaKnown RBP8.52□□□□□ -1.04
SS18-213ENST00000579640 A0A1W2PN81 502 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 K7EPK0 472 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 FCN1O00602 326 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 SYNGR2O43760 224 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 CHST1O43916 411 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 CNIH1O95406 144 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 MPC2O95563 127 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 PVALBP20472 110 aaPredicted RBP8.52□□□□□ -1.04
SS18-213ENST00000579640 CHRNA7P36544 502 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 S100A10P60903 97 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 GNB1P62873 340 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 CIB3Q96Q77 187 aaPredicted RBP8.52□□□□□ -1.04
SS18-213ENST00000579640 RAB40CQ96S21 281 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 SRSF8Q9BRL6 282 aaKnown RBP8.52□□□□□ -1.04
SS18-213ENST00000579640 ENY2Q9NPA8 101 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 NDUFA4L2Q9NRX3 87 aa8.52□□□□□ -1.04
SS18-213ENST00000579640 LSM5Q9Y4Y9 91 aaKnown RBP8.52□□□□□ -1.04
SS18-213ENST00000579640 IGHV7-81A0A0B4J1V7 117 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 DNAJC9-AS1A6NH13 148 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 CEBPZOSA8MTT3 80 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 INS-IGF2F8WCM5 200 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 KCNAB3O43448 404 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 AMY1AP04745 511 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 HILS1P60008 231 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 RPL15P61313 204 aaKnown RBP8.52□□□□□ -1.05
SS18-213ENST00000579640 POLR2GP62487 172 aaKnown RBP eCLIP8.52□□□□□ -1.05
SS18-213ENST00000579640 CX3CL1P78423 397 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 FXYD3Q14802 87 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 LRRC37A5PQ49AS3 106 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 HSD17B13Q7Z5P4 300 aaPredicted RBP8.52□□□□□ -1.05
SS18-213ENST00000579640 THAP6Q8TBB0 222 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 SRSF12Q8WXF0 261 aaKnown RBP8.52□□□□□ -1.05
SS18-213ENST00000579640 ARPC1AQ92747 370 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 WDR89Q96FK6 387 aaPredicted RBP8.52□□□□□ -1.05
SS18-213ENST00000579640 NPFFR1Q9GZQ6 430 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 RBKSQ9H477 322 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 PLEKHA3Q9HB20 300 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 TNFRSF19Q9NS68 423 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 TNCP24821 2201 aa8.52□□□□□ -1.05
SS18-213ENST00000579640 L7N2F9 121 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 GPR137BO60478 399 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 DEDDO75618 318 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 NXPH3O95157 252 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 MYOD1P15172 320 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 HOXA1P49639 335 aaPredicted RBP8.51□□□□□ -1.05
SS18-213ENST00000579640 TAS2R30P59541 319 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 VAMP2P63027 116 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 SSBP2P81877 361 aaPredicted RBP8.51□□□□□ -1.05
SS18-213ENST00000579640 PRSS54Q6PEW0 395 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 DTD1Q8TEA8 209 aa8.51□□□□□ -1.05
SS18-213ENST00000579640 HINT2Q9BX68 163 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms