RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZFP57Q9NU63 452 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 GSKIPQ9P0R6 139 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 VPREB3Q9UKI3 123 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 MXRA5Q9NR99 2828 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 NCBP2LA6PVI3 153 aaKnown RBP12.83□□□□□ -0.36
SS18-211ENST00000578954 M0QZK8 103 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 HLA-DRB1P01911 266 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 SRD5A1P18405 259 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 HSPE1P61604 102 aaKnown RBP12.83□□□□□ -0.36
SS18-211ENST00000578954 SSBP2P81877 361 aaPredicted RBP12.83□□□□□ -0.36
SS18-211ENST00000578954 TNFRSF9Q07011 255 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 RAB32Q13637 225 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 TMEM219Q86XT9 240 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 C5orf56Q8N8D9 126 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 OR2T35Q8NGX2 323 aa12.83□□□□□ -0.36
SS18-211ENST00000578954 TRAV14DV4A0A0A6YYC5 116 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 BTBD17A6NE02 478 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 K7EPK0 472 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 MPC2O95563 127 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 AMY1AP04745 511 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 PSMB6P28072 239 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 SPCS3P61009 180 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 CD300CQ08708 224 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 FGL1Q08830 312 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 PJVKQ0ZLH3 352 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 LY6EQ16553 131 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 C11orf1Q9H5F2 150 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 RCL1Q9Y2P8 373 aaKnown RBP12.82□□□□□ -0.36
SS18-211ENST00000578954 OR51B2Q9Y5P1 312 aa12.82□□□□□ -0.36
SS18-211ENST00000578954 NSD1Q96L73 2696 aaPredicted RBP12.82□□□□□ -0.36
SS18-211ENST00000578954 TET2Q6N021 2002 aaPredicted RBP12.81□□□□□ -0.36
SS18-211ENST00000578954 INAFM1C9JVW0 142 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 FCN1O00602 326 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 PLXNB1O43157 2135 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 HOXA3O43365 443 aaPredicted RBP12.81□□□□□ -0.36
SS18-211ENST00000578954 CHST1O43916 411 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 PFDN1O60925 122 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 RBMXL2O75526 392 aaKnown RBP12.81□□□□□ -0.36
SS18-211ENST00000578954 CA2P00918 260 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 LYL1P12980 280 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 COMPP49747 757 aaPredicted RBP12.81□□□□□ -0.36
SS18-211ENST00000578954 PRCDQ00LT1 54 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 PLGLAQ15195 96 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 Q5BKY6 102 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 OR1L8Q8NGR8 309 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 COMMD5Q9GZQ3 224 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 NDUFA4L2Q9NRX3 87 aa12.81□□□□□ -0.36
SS18-211ENST00000578954 FN1P02751 2386 aaKnown RBP12.81□□□□□ -0.36
SS18-211ENST00000578954 TEX50A0A1B0GTY4 177 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 CGB1A6NKQ9 187 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 INS-IGF2F8WCM5 200 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 H0YIZ8 118 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 CLDN34H7C241 214 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 MED6O75586 246 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 DEDDO75618 318 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 SCGB1D2O95969 90 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 PET100P0DJ07 73 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 SLC25A4P12235 298 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 MYOD1P15172 320 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 POLR2GP62487 172 aaKnown RBP eCLIP12.8□□□□□ -0.36
SS18-211ENST00000578954 ZNF562Q6V9R5 426 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 RASL11BQ9BPW5 248 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 RNF126Q9BV68 326 aa12.8□□□□□ -0.36
SS18-211ENST00000578954 IGHV7-81A0A0B4J1V7 117 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 A0A1B0GW64 132 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 SYNGR2O43760 224 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 CRLF1O75462 422 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 LY86O95711 162 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 IFNA17P01571 189 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 C1QBP02746 253 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 FAM157CP0CG43 387 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 VDAC2P45880 294 aaPredicted RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 RPL27AP46776 148 aaKnown RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 S100A10P60903 97 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 CX3CL1P78423 397 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 TNXAQ16473 311 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 LRRC37A5PQ49AS3 106 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 C10orf55Q5SWW7 151 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 C11orf87Q6NUJ2 197 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 PRSS54Q6PEW0 395 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 RBMS3Q6XE24 437 aaKnown RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 Q71RC1 249 aaPredicted RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 RAB40CQ96S21 281 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 CLCC1Q96S66 551 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 SRSF8Q9BRL6 282 aaKnown RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 RBKSQ9H477 322 aa12.79□□□□□ -0.36
SS18-211ENST00000578954 LSM5Q9Y4Y9 91 aaKnown RBP12.79□□□□□ -0.36
SS18-211ENST00000578954 E7EUB6 86 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 SMLR1H3BR10 107 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 ACTL6BO94805 426 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 NXPH3O95157 252 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 TAS2R30P59541 319 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 NDPQ00604 133 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 SRSF12Q8WXF0 261 aaKnown RBP12.78□□□□□ -0.36
SS18-211ENST00000578954 CIB3Q96Q77 187 aaPredicted RBP12.78□□□□□ -0.36
SS18-211ENST00000578954 MAGT1Q9H0U3 335 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 OR5AC2Q9NZP5 309 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 MBD2Q9UBB5 411 aa12.78□□□□□ -0.36
SS18-211ENST00000578954 MAST4O15021 2626 aa12.77□□□□□ -0.36
SS18-211ENST00000578954 A0A1W2PN81 502 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms