RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GPN1Q9HCN4 374 aaPredicted RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 FKBP11Q9NYL4 201 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 LINC01548A6NM66 108 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 C15orf61A6NNL5 157 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 STPG2Q8N412 459 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 OR4A16Q8NH70 328 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 SGMS2Q8NHU3 365 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 GRPEL2Q8TAA5 225 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 FOXA2Q9Y261 457 aaPredicted RBP13.47□□□□□ -0.25
NUP88-210ENST00000574867 TMED3Q9Y3Q3 217 aa13.47□□□□□ -0.25
NUP88-210ENST00000574867 TNCP24821 2201 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 SPNP16150 400 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 RPL27AP46776 148 aaKnown RBP13.46□□□□□ -0.25
NUP88-210ENST00000574867 LYZL2Q7Z4W2 148 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 OR52B4Q8NGK2 314 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 SPIN2AQ99865 258 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 SPIN2BQ9BPZ2 258 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 SEC22CQ9BRL7 303 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 WNT10AQ9GZT5 417 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 TMEM14BQ9NUH8 114 aa13.46□□□□□ -0.25
NUP88-210ENST00000574867 A0A0G2JRQ6 117 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 PLXNB1O43157 2135 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 PROK1P58294 105 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 TMEM267Q0VDI3 215 aaPredicted RBP13.46□□□□□ -0.26
NUP88-210ENST00000574867 KRTAP21-3Q3LHN1 58 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 AWAT1Q58HT5 328 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 NMSQ5H8A3 153 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 OR5B3Q8NH48 314 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 TMEM68Q96MH6 324 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 NOL4LQ96MY1 436 aaPredicted RBP13.46□□□□□ -0.26
NUP88-210ENST00000574867 NSG2Q9Y328 171 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 FBXO7Q9Y3I1 522 aa13.46□□□□□ -0.26
NUP88-210ENST00000574867 RBMXL2O75526 392 aaKnown RBP13.45□□□□□ -0.26
NUP88-210ENST00000574867 OR2B8PP59922 312 aa13.45□□□□□ -0.26
NUP88-210ENST00000574867 THOC7Q6I9Y2 204 aaKnown RBP13.45□□□□□ -0.26
NUP88-210ENST00000574867 ZNF429Q86V71 674 aa13.45□□□□□ -0.26
NUP88-210ENST00000574867 KLHDC1Q8N7A1 406 aa13.45□□□□□ -0.26
NUP88-210ENST00000574867 FAM103A1Q9BTL3 118 aaKnown RBP13.45□□□□□ -0.26
NUP88-210ENST00000574867 ZNF257Q9Y2Q1 563 aa13.45□□□□□ -0.26
NUP88-210ENST00000574867 TRAV41A0A0B4J266 112 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 SNRPGP15A8MWD9 76 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 EGR2P11161 476 aaPredicted RBP13.44□□□□□ -0.26
NUP88-210ENST00000574867 SLC35B1P78383 322 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 AKIRIN2Q53H80 203 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 C10orf55Q5SWW7 151 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 MINDY2Q8NBR6 621 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 COA4Q9NYJ1 87 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 CACFD1Q9UGQ2 172 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 OR51B2Q9Y5P1 312 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 A0A0B4J293 547 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 OXA1LQ15070 435 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 ECSCRQ19T08 205 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 IZUMO4Q1ZYL8 232 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 OR1L8Q8NGR8 309 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 GPR146Q96CH1 333 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 SRSF8Q9BRL6 282 aaKnown RBP13.44□□□□□ -0.26
NUP88-210ENST00000574867 QTRT1Q9BXR0 403 aaKnown RBP13.44□□□□□ -0.26
NUP88-210ENST00000574867 CACNG5Q9UF02 275 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 LINC00527Q9UJ94 153 aa13.44□□□□□ -0.26
NUP88-210ENST00000574867 PSMB11A5LHX3 300 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 MSGN1A6NI15 193 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 IFNA21P01568 189 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 SULT1A3P0DMM9 295 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 SULT1A4P0DMN0 295 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 SLC25A6P12236 298 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 AARDQ4LEZ3 155 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 C19orf54Q5BKX5 351 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 C12orf45Q8N5I9 185 aaPredicted RBP13.43□□□□□ -0.26
NUP88-210ENST00000574867 PDCD10Q9BUL8 212 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.43□□□□□ -0.26
NUP88-210ENST00000574867 A0A1B0GU03 582 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 HOXB5P09067 269 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 CFHR3Q02985 330 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 SMCO1Q147U7 214 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 UNQ5815/PRO19632Q6UWF5 114 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 HSD17B13Q7Z5P4 300 aaPredicted RBP13.43□□□□□ -0.26
NUP88-210ENST00000574867 CENPVQ7Z7K6 275 aaPredicted RBP13.43□□□□□ -0.26
NUP88-210ENST00000574867 LFNGQ8NES3 379 aa13.43□□□□□ -0.26
NUP88-210ENST00000574867 TEX50A0A1B0GTY4 177 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 DBX1A6NMT0 343 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 TEX22C9J3V5 150 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 G3V318 75 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 OPN1MWP04001 364 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 OPN1MW2P0DN77 364 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 OPN1MW3P0DN78 364 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 MYOD1P15172 320 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 TATDN3Q17R31 274 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 GGNBP1Q5YKI7 109 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 Q6ZRM9 215 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 COMMD1Q8N668 190 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 WIPF2Q8TF74 440 aaPredicted RBP13.42□□□□□ -0.26
NUP88-210ENST00000574867 WFDC12Q8WWY7 111 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 FYTTD1Q96QD9 318 aaKnown RBP13.42□□□□□ -0.26
NUP88-210ENST00000574867 NDUFA4L2Q9NRX3 87 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 WSB1Q9Y6I7 421 aa13.42□□□□□ -0.26
NUP88-210ENST00000574867 FBN1P35555 2871 aaKnown RBP13.42□□□□□ -0.26
NUP88-210ENST00000574867 HAX1O00165 279 aa13.41□□□□□ -0.26
NUP88-210ENST00000574867 TRAPPC2P0DI81 140 aa13.41□□□□□ -0.26
NUP88-210ENST00000574867 TRAPPC2BP0DI82 140 aa13.41□□□□□ -0.26
NUP88-210ENST00000574867 HSPE1P61604 102 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms