RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RAI1Q7Z5J4 1906 aaPredicted RBP18.72■□□□□ 0.59
VPS53-211ENST00000571805 CNOT1A5YKK6 2376 aaKnown RBP18.72■□□□□ 0.59
VPS53-211ENST00000571805 CD99P14209 185 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 OR1P1Q8NH06 330 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 GAFA1Q96PS6 74 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 PFDN5Q99471 154 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 TRGV10A0A0A0MS01 117 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 CXorf1O96002 111 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 IGHV1-46P01743 117 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 TIMP3P35625 211 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 MRPS11P82912 194 aaKnown RBP18.71■□□□□ 0.59
VPS53-211ENST00000571805 Q6ZS92 163 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 AURKAIP1Q9NWT8 199 aaPredicted RBP18.71■□□□□ 0.59
VPS53-211ENST00000571805 IDI2-AS1Q9NZ38 188 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 IL19Q9UHD0 177 aa18.71■□□□□ 0.59
VPS53-211ENST00000571805 IL6RP08887 468 aaPredicted RBP18.7■□□□□ 0.58
VPS53-211ENST00000571805 ACTL10Q5JWF8 245 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 LYG1Q8N1E2 194 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 ZNF114Q8NC26 417 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 SSMEM1Q8WWF3 244 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 TXNDC17Q9BRA2 123 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 ICE1Q9Y2F5 2266 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 NPY1RP25929 384 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 TNFAIP6P98066 277 aaPredicted RBP18.7■□□□□ 0.58
VPS53-211ENST00000571805 DEFB108BQ8NET1 73 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 SLC24A4Q8NFF2 622 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 LINC00574Q9H8X3 128 aa18.7■□□□□ 0.58
VPS53-211ENST00000571805 POU2AF1Q16633 256 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 C9orf152Q5JTZ5 239 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 ZCCHC14Q8WYQ9 949 aaKnown RBP18.69■□□□□ 0.58
VPS53-211ENST00000571805 TRBV20OR9-2A0A075B6H5 130 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 CA2P00918 260 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 MYOD1P15172 320 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 TEPPQ6URK8 271 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 LURAP1LQ8IV03 231 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 CISD2Q8N5K1 135 aaKnown RBP18.69■□□□□ 0.58
VPS53-211ENST00000571805 ADTRPQ96IZ2 230 aa18.69■□□□□ 0.58
VPS53-211ENST00000571805 XKRY2A2RUG3 117 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 PGPEP1LA6NFU8 196 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 C1QTNF9P0C862 333 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 NUBP1P53384 320 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 FAM27E3Q08E93 113 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 KCNIP4Q6PIL6 250 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 ZNF788Q6ZQV5 615 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 CCL13Q99616 98 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 PLCE1Q9P212 2302 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 MMP23AO75900 390 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 AMBPP02760 352 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 CEACAM8P31997 349 aaPredicted RBP18.68■□□□□ 0.58
VPS53-211ENST00000571805 PDLIM4P50479 330 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 LCN2P80188 198 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 GAMTQ14353 236 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 EFNB3Q15768 340 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 ACY3Q96HD9 319 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 SEPSECSQ9HD40 501 aaKnown RBP18.68■□□□□ 0.58
VPS53-211ENST00000571805 FUT9Q9Y231 359 aa18.68■□□□□ 0.58
VPS53-211ENST00000571805 LAMA5O15230 3695 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 FAM78BQ5VT40 261 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 SPATA31B1PQ5VZV4 182 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 TMEM144Q7Z5S9 345 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 FAM216BQ8N7L0 139 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 STPG3Q8N7X2 389 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 SFXN3Q9BWM7 321 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 YTHDF2Q9Y5A9 579 aaKnown RBP18.67■□□□□ 0.58
VPS53-211ENST00000571805 SELENOVP59797 346 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 RNASEH2CQ8TDP1 164 aaKnown RBP18.67■□□□□ 0.58
VPS53-211ENST00000571805 TMEM37Q8WXS4 190 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 CORO2AQ92828 525 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 TMEM204Q9BSN7 226 aa18.67■□□□□ 0.58
VPS53-211ENST00000571805 COL8A2P25067 703 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 IL3RAP26951 378 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 RPL29P47914 159 aaKnown RBP18.66■□□□□ 0.58
VPS53-211ENST00000571805 GNG10P50151 68 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 IMMP2LQ96T52 175 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 ENY2Q9NPA8 101 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 OR51B2Q9Y5P1 312 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 SCO2A0A1W2PP80 73 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 K7EM74 188 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 CD40P25942 277 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 GCHFRP30047 84 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 PRSS8Q16651 343 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 NEUROG1Q92886 237 aa18.66■□□□□ 0.58
VPS53-211ENST00000571805 DYSFO75923 2080 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 A8MXE2 369 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 PRR20EP86478 221 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 PRR20CP86479 221 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 PRR20DP86480 221 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 PRR20BP86481 221 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 PRR20AP86496 221 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 FOXL1Q12952 345 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 RBMXL3Q8N7X1 1067 aaKnown RBP18.65■□□□□ 0.58
VPS53-211ENST00000571805 SNRNP40Q96DI7 357 aaKnown RBP18.65■□□□□ 0.58
VPS53-211ENST00000571805 DCAF16Q9NXF7 216 aa18.65■□□□□ 0.58
VPS53-211ENST00000571805 RPUSD1Q9UJJ7 312 aaKnown RBP18.65■□□□□ 0.58
VPS53-211ENST00000571805 DVL1O14640 695 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 TM4SF5O14894 197 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 CT45A6P0DMU7 189 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 CT45A5P0DMU8 189 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 CT45A7P0DMV0 189 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 RPL15P61313 204 aaKnown RBP18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms