RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 LRP1BQ9NZR2 4599 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 DMBT1Q9UGM3 2413 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 IGHV3-35A0A0C4DH35 117 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 TRBV5-5A0A0J9YX44 114 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 MFSD2BA6NFX1 497 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 C15orf61A6NNL5 157 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 EPM2AB3EWF7 344 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 TEX22C9J3V5 150 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 F5H697 171 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 MRPS14O60783 128 aaKnown RBP4.2□□□□□ -1.74
VPS53-208ENST00000570650 CD74P04233 296 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 CRYGCP07315 174 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 CTSDP07339 412 aaPredicted RBP4.2□□□□□ -1.74
VPS53-208ENST00000570650 MIFP14174 115 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 HIST1H1BP16401 226 aaKnown RBP4.2□□□□□ -1.74
VPS53-208ENST00000570650 GPR183P32249 361 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 KLK9Q2XQG4 91 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 Q499Y3 187 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 C19orf35Q6ZS72 473 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 NKAIN3Q8N8D7 197 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 TMEM190Q8WZ59 177 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 SMIM19Q96E16 107 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 ADTRPQ96IZ2 230 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 HDHD3Q9BSH5 251 aaPredicted RBP4.2□□□□□ -1.74
VPS53-208ENST00000570650 CHRDL1Q9BU40 450 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 Q9N2K0 584 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 DAZ1Q9NQZ3 744 aaKnown RBP4.2□□□□□ -1.74
VPS53-208ENST00000570650 SLC2A9Q9NRM0 540 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 PLEKHJ1Q9NW61 149 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 KLK9Q9UKQ9 250 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 COX11Q9Y6N1 276 aa4.2□□□□□ -1.74
VPS53-208ENST00000570650 IGLV11-55A0A075B6I3 123 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 TRBV5-7A0A0A0MS05 114 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 IGKV1-6A0A0C4DH72 117 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 A0A1W2PPK0 400 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 OGG1O15527 345 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 TGOLN2O43493 480 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 IGLV2-14P01704 120 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 ZNF735P0CB33 412 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 UBBP0CG47 229 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 INAFM2P0DMQ5 153 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 DEFA4P12838 97 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 SRMP19623 302 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 HTR2CP28335 458 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 RPL27AP46776 148 aaKnown RBP4.19□□□□□ -1.74
VPS53-208ENST00000570650 SERPINB10P48595 397 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 RPS27AP62979 156 aaKnown RBP4.19□□□□□ -1.74
VPS53-208ENST00000570650 HSP90B2PQ58FF3 399 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 YIF1BQ5BJH7 314 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 LIPKQ5VXJ0 399 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 OR10K2Q6IF99 312 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 AMIGO2Q86SJ2 522 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 OR52I1Q8NGK6 324 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 ZNF502Q8TBZ5 544 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 C5orf30Q96GV9 206 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 UQCC2Q9BRT2 126 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 TM2D1Q9BX74 207 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 TMEM59Q9BXS4 323 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 AASSQ9UDR5 926 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 AK3Q9UIJ7 227 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 POMPQ9Y244 141 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 ETV7Q9Y603 341 aa4.19□□□□□ -1.74
VPS53-208ENST00000570650 LINC00473A8K010 186 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 ZNF705EA8MWA4 302 aaPredicted RBP4.18□□□□□ -1.74
VPS53-208ENST00000570650 TRDCB7Z8K6 153 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 E7EUB6 86 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 K7EMT4 169 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 NDUFA4O00483 81 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 IL6RP08887 468 aaPredicted RBP4.18□□□□□ -1.74
VPS53-208ENST00000570650 LIMS3P0CW19 117 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 LIMS4P0CW20 117 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 AREGP15514 252 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 RPA2P15927 270 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 DUTP33316 252 aaKnown RBP4.18□□□□□ -1.74
VPS53-208ENST00000570650 MAS1LP35410 378 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 TFPI2P48307 235 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 PSMD7P51665 324 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 RPS11P62280 158 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS53-208ENST00000570650 IRF3Q14653 427 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 C12orf74Q32Q52 190 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 TMEM41BQ5BJD5 291 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 OR2G6Q5TZ20 316 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 TMPRSS11AQ6ZMR5 421 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 ZNF767PQ75MW2 155 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 SSX9Q7RTT3 188 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 ZNF367Q7RTV3 350 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 VSTM2AQ8TAG5 236 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 GGHQ92820 318 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 Q96MT0 163 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 SLC29A1Q99808 456 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 NICN1Q9BSH3 213 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 DCUN1D5Q9BTE7 237 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 C20orf24Q9BUV8 137 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 SCRT1Q9BWW7 348 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 OR51E2Q9H255 320 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 AMBNQ9NP70 447 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 C12orf4Q9NQ89 552 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 SMPD3Q9NY59 655 aaPredicted RBP4.18□□□□□ -1.74
VPS53-208ENST00000570650 CELA1Q9UNI1 258 aa4.18□□□□□ -1.74
VPS53-208ENST00000570650 RBM7Q9Y580 266 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms