RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GSG1LQ6UXU4 331 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 DNM1P46Q6ZS02 220 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 DAZ4Q86SG3 579 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 ZNF429Q86V71 674 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LRRC28Q86X40 367 aaPredicted RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 ANGPTL5Q86XS5 388 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 ZNF433Q8N7K0 673 aaPredicted RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 DCAF4L2Q8NA75 395 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 OR13A1Q8NGR1 328 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 OR10G6Q8NH81 332 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 GRPEL2Q8TAA5 225 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 ZNF519Q8TB69 540 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 GNPDA2Q8TDQ7 276 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LRRC29Q8WV35 223 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 NEURL3Q96EH8 262 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 REEP6Q96HR9 211 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SLC35E1Q96K37 410 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CARD19Q96LW7 228 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 QKIQ96PU8 341 aaKnown RBP eCLIP2.18□□□□□ -2.06
VPS35-209ENST00000568642 OR2A7Q96R45 310 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 PFDN5Q99471 154 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 C12orf57Q99622 126 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CMSS1Q9BQ75 279 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 AIF1LQ9BQI0 150 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 EBF4Q9BQW3 602 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CCDC90BQ9GZT6 254 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 OR52D1Q9H346 318 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 ZDHHC11Q9H8X9 412 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 PDFQ9HBH1 243 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 DAZ1Q9NQZ3 744 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 DAZ3Q9NR90 486 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 UBQLN4Q9NRR5 601 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CA10Q9NS85 328 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 MED29Q9NX70 200 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 DNAJC27Q9NZQ0 273 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LSM5Q9Y4Y9 91 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 CMYA5Q8N3K9 4069 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 TRAV8-2A0A0B4J237 113 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TRAV26-2A0A0B4J265 109 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 A0A0B4J2A0 478 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 IGKV6D-41A0A0C4DH26 115 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 hADV38S2A0JD32 116 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 MAP1LC3B2A6NCE7 125 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PGPA6NDG6 321 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ARL5CA6NH57 179 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 H3BP45 60 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 GYG2O15488 501 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ANGPTL7O43827 346 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PDE6DO43924 150 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 CCDC22O60826 627 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ZNF253O75346 499 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 SERPINB7O75635 380 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 POP7O75817 140 aaKnown RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 CCNE2O96020 404 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PTHP01270 115 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PATE4P0C8F1 98 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 OR13C7P0DN81 318 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 S100GP29377 79 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 AGTR1P30556 359 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 SPRP35270 261 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 PSMD8P48556 350 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 GFERP55789 205 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 CKS1BP61024 79 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TBPL1P62380 186 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 GNB1P62873 340 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TNFAIP6P98066 277 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 MEF2CQ06413 473 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 TMEM267Q0VDI3 215 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 JOSD1Q15040 202 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 MPPED2Q15777 294 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 C12orf74Q32Q52 190 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ZNF404Q494X3 552 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 AVPI1Q5T686 147 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 Q5XG85 94 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TBPL2Q6SJ96 375 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PLET1Q6UQ28 207 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 CLEC19AQ6UXS0 136 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 C4orf22Q6V702 233 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 Q6ZSR6 202 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 STRADAQ7RTN6 431 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TMEM61Q8N0U2 210 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 OR4K15Q8NH41 348 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 OR13C6PQ8NH95 151 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 GALMQ96C23 342 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 C12orf43Q96C57 262 aaKnown RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 STARD4Q96DR4 205 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 AURKBQ96GD4 344 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 C14orf144Q96I85 54 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 VSIG2Q96IQ7 327 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 CCDC115Q96NT0 180 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 OLFM3Q96PB7 478 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 IP6K3Q96PC2 410 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TSPAN32Q96QS1 320 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 LINC01587Q99440 93 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ZNF184Q99676 751 aaPredicted RBP2.17□□□□□ -2.06
VPS35-209ENST00000568642 MAP1LC3BQ9GZQ8 125 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 SH3BGRL3Q9H299 93 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 EDA2RQ9HAV5 297 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ACER3Q9NUN7 267 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 UQCC1Q9NVA1 299 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms