RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	NDUFAF3	Q9BU61	184 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	SCRT2	Q9NQ03	307 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	KLK9	Q9UKQ9	250 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	MRPS7	Q9Y2R9	242 aa	Known RBP	11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	PRELID3B	Q9Y3B1	194 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	FOXI3	A8MTJ6	420 aa	Predicted RBP	11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	AMBP	P02760	352 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	PTBP1	P26599	531 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF767P	Q75MW2	155 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	GBGT1	Q8N5D6	347 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF485	Q8NCK3	441 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	RNF2	Q99496	336 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	THYN1	Q9P016	225 aa		11.72	□□□□□ -0.53
CLK3-223	ENST00000568488	C15orf61	A6NNL5	157 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	NDUFA4	O00483	81 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	IFNA21	P01568	189 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	IFNA17	P01571	189 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	RPL30	P62888	115 aa	Known RBP	11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	ACSM3	Q53FZ2	586 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	PLAC9	Q5JTB6	97 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	SMPX	Q9UHP9	88 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	ETV7	Q9Y603	341 aa		11.71	□□□□□ -0.53
CLK3-223	ENST00000568488	DNAH5	Q8TE73	4624 aa		11.71	□□□□□ -0.54
CLK3-223	ENST00000568488	ELOA3C	A0A087WX78	387 aa	Predicted RBP	11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	IGHV3-49	A0A0A0MS15	119 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488		K7EMT4	169 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	MIF	P14174	115 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	RPL8	P62917	257 aa	Known RBP	11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	C1orf134	Q5TEV5	83 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	LEMD1	Q68G75	181 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	PUSL1	Q8N0Z8	303 aa	Known RBP	11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	CMTM3	Q96MX0	182 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	SCRT1	Q9BWW7	348 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	PLGRKT	Q9HBL7	147 aa		11.7	□□□□□ -0.54
CLK3-223	ENST00000568488	IGHV3-21	A0A0B4J1V1	117 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	FCGR3A	P08637	254 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	HLA-G	P17693	338 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488		Q6ZR54	194 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	OR4S2	Q8NH73	311 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	PHYHIP	Q92561	330 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	BSCL2	Q96G97	398 aa	Predicted RBP	11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	RHPN1-AS1	Q9BWJ2	59 aa		11.69	□□□□□ -0.54
CLK3-223	ENST00000568488	CGB1	A6NKQ9	187 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	ATP8B1	O43520	1251 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	CD1A	P06126	327 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	PAFAH1B2	P68402	229 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	PLA2G7	Q13093	441 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	C12orf74	Q32Q52	190 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	SLC25A24	Q6NUK1	477 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488		Q6ZRM9	215 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	STH	Q8IWL8	128 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	H1FOO	Q8IZA3	346 aa	Predicted RBP	11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	UBAC2	Q8NBM4	344 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	TMEM116	Q8NCL8	245 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	OR56B1	Q8NGI3	324 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	VN1R17P	Q8TDU5	208 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	TCTEX1D2	Q8WW35	142 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	SPATA2	Q9UM82	520 aa		11.68	□□□□□ -0.54
CLK3-223	ENST00000568488	IGHV7-4-1	A0A0J9YVY3	117 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	C15orf62	A8K5M9	175 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	CHEK1	O14757	476 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	DIRAS3	O95661	229 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	CDK1	P06493	297 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	CD36	P16671	472 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	DEFB131A	P59861	70 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	IRF3	Q14653	427 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	HSD17B12	Q53GQ0	312 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	SPSB3	Q6PJ21	355 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	GIMAP1	Q8WWP7	306 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	HRASLS	Q9HDD0	168 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	CELA1	Q9UNI1	258 aa		11.67	□□□□□ -0.54
CLK3-223	ENST00000568488	RBMX2	Q9Y388	322 aa	Known RBP	11.67	□□□□□ -0.54
CLK3-223	ENST00000568488		A0A075B6Q4	140 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	IGHV3OR16-13	A0A075B7E8	117 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	IGHV3-74	A0A0B4J1X5	117 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	EFCAB10	A6NFE3	127 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	CYB5B	O43169	146 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	CIB2	O75838	187 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	YIF1A	O95070	293 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	HRAS	P01112	189 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	OR2B8P	P59922	312 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	ST3GAL4	Q11206	333 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	ZNF555	Q8NEP9	628 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	C9orf16	Q9BUW7	83 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	KCNK7	Q9Y2U2	307 aa		11.66	□□□□□ -0.54
CLK3-223	ENST00000568488	IGLC7	A0M8Q6	106 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	DNASE2	O00115	360 aa	Predicted RBP	11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	MYL12B	O14950	172 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	DENR	O43583	198 aa	Known RBP	11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	CLDN12	P56749	244 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	TNP2	Q05952	138 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488		Q56UQ5	140 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	LIPK	Q5VXJ0	399 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	RAB3C	Q96E17	227 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	C21orf62	Q9NYP8	219 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488		X6R8D5	127 aa		11.65	□□□□□ -0.54
CLK3-223	ENST00000568488	ZNF705E	A8MWA4	302 aa	Predicted RBP	11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	CD37	P11049	281 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	GNB3	P16520	340 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	NFYA	P23511	347 aa	Predicted RBP	11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 73 ms