RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DENND4BO75064 1496 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 ZCCHC11Q5TAX3 1644 aaKnown RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 HECW1Q76N89 1606 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SHANK3Q9BYB0 1731 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 UBR2Q8IWV8 1755 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CACNA1SQ13698 1873 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 GBF1Q92538 1859 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CITO14578 2027 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 KIAA2026Q5HYC2 2103 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MED13Q9UHV7 2174 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 MYH9P35579 1960 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 DENND4CQ5VZ89 1909 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 NUP210LQ5VU65 1888 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 NUP210Q8TEM1 1887 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 KIF13BQ9NQT8 1826 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ADAMTSL1Q8N6G6 1762 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 REREQ9P2R6 1566 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ERCC6Q03468 1493 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ARAP1Q96P48 1450 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 DCCP43146 1447 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 RTL1A6NKG5 1358 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 RFX7Q2KHR2 1363 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ROBO3Q96MS0 1386 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 IGKV1D-37A0A075B6S9 117 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TMED7-TICAM2A0A0A6YYA0 188 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TRAV8-1A0A0A6YYK1 113 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TRGV4A0A0C4DH28 118 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 IGSF23A1L1A6 192 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 IGKV2-29A2NJV5 120 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 TRAPPC13A5PLN9 417 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 PRORSD1PA6NEY8 169 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 OR4C45A6NMZ5 311 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 B4DEV8 164 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C9JQL5 133 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 M0R381 172 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 KPNA4O00629 521 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 MRASO14807 208 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 HMGB3O15347 200 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 GPR75O95800 540 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 IGHV3-53P01767 116 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C1QBP02746 253 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 OPN1SWP03999 348 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 SERPINE1P05121 402 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 FAM228BP0C875 321 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ZNF22P17026 224 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 ORM2P19652 201 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GZMHP20718 246 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 CNTFRP26992 372 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 CRABP2P29373 138 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 S100GP29377 79 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 LINC00313P59037 77 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GABARAPL2P60520 117 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 HSPE1P61604 102 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 SNRPD2P62316 118 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 PSPHP78330 225 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 DHRS2Q13268 280 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 SPCS2Q15005 226 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 SURF2Q15527 256 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 KCNJ8Q15842 424 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 BRMS1LQ5PSV4 323 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C9orf64Q5T6V5 341 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TMEM78Q5T7P6 136 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 HES3Q5TGS1 186 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 SAMD13Q5VXD3 122 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 EBLN2Q6P2I7 272 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C5orf46Q6UWT4 87 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 Q6ZSA8 131 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GOLT1AQ6ZVE7 132 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TCF23Q7RTU1 214 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 DHFR2Q86XF0 187 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ZBTB8OSQ8IWT0 167 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 STX19Q8N4C7 294 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ZNF439Q8NDP4 499 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 OR5H2Q8NGV7 314 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 OR2T27Q8NH04 317 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GRPEL2Q8TAA5 225 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 LMX1AQ8TE12 382 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 CT55Q8WUE5 264 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C11orf40Q8WZ69 217 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 KLK6Q92876 244 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GALMQ96C23 342 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 C12orf43Q96C57 262 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 RMND5BQ96G75 393 aaPredicted RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 DNAJC30Q96LL9 226 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TSPAN32Q96QS1 320 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TRIB3Q96RU7 358 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GPER1Q99527 375 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TMEM147Q9BVK8 224 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 RNASE7Q9H1E1 156 aaKnown RBP0.76□□□□□ -2.29
VPS35-207ENST00000568191 FAM96AQ9H5X1 160 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 LRTM1Q9HBL6 345 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 CISHQ9NSE2 258 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 UQCC1Q9NVA1 299 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 GSKIPQ9P0R6 139 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 SLC23A2Q9UGH3 650 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 TAC3Q9UHF0 121 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 OR52A1Q9UKL2 312 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 PRNDQ9UKY0 176 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 ANAPC10Q9UM13 185 aa0.76□□□□□ -2.29
VPS35-207ENST00000568191 COQ4Q9Y3A0 265 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms