RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 VKORC1L1Q8N0U8 176 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PNKDQ8N490 385 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 DEFB108BQ8NET1 73 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 VSTM2AQ8TAG5 236 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TMEM170AQ8WVE7 144 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 NEUROG1Q92886 237 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TMEM186Q96B77 213 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 RPUSD4Q96CM3 377 aaKnown RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 PLPPR2Q96GM1 343 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 IMMP2LQ96T52 175 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 VKORC1Q9BQB6 163 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PCGF1Q9BSM1 259 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 C19orf24Q9BVV8 132 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 SAP30LQ9HAJ7 183 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TMEM106BQ9NUM4 274 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 ESPL1Q14674 2120 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CHD3Q12873 2000 aaKnown RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 ZNF318Q5VUA4 2279 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TRBV23-1A0A0A0MS06 115 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 B9A039 149 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 H0YJW9 148 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 J3QR06 171 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 ATXN7O15265 892 aaPredicted RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 GGCTO75223 188 aaKnown RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 MMP23AO75900 390 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 CA2P00918 260 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 AREGP15514 252 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 USF1P22415 310 aaPredicted RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 GALR1P47211 349 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 GNG10P50151 68 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 FAM3BP58499 235 aaPredicted RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 RPS16P62249 146 aaKnown RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 LCN2P80188 198 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 FBXL19-AS1Q494R0 122 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 ARSJQ5FYB0 599 aaPredicted RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 MIC13Q5XKP0 118 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 KCNIP4Q6PIL6 250 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 SPNS3Q6ZMD2 512 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 ABHD12Q8N2K0 398 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 STPG3Q8N7X2 389 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 OR5AN1Q8NGI8 311 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TMEM167AQ8TBQ9 72 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 GATAD1Q8WUU5 269 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 RND1Q92730 232 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TNFRSF14Q92956 283 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 RNASE6Q93091 150 aaKnown RBP5.11□□□□□ -1.59
CLN3-223ENST00000566472 LEAP2Q969E1 77 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 C11orf52Q96A22 123 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 RNF2Q99496 336 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 DYNLRB1Q9NP97 96 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TMEM167BQ9NRX6 74 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 SLC45A2Q9UMX9 530 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 LY96Q9Y6Y9 160 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 URGCP-MRPS24S4R325 110 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TRIOO75962 3097 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 EYSQ5T1H1 3165 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 OTOGLQ3ZCN5 2332 aa5.11□□□□□ -1.59
CLN3-223ENST00000566472 TRAV9-1A0A075B6T8 112 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 TEX50A0A1B0GTY4 177 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 SHISA9B4DS77 424 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 C9JCJ5 164 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 DLL1O00548 723 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 PHOX2AO14813 284 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HMGB3O15347 200 aaKnown RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BKO60814 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 IGHV3-7P01780 117 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 TRGC2P03986 189 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BJP06899 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 SAA1P0DJI8 122 aaPredicted RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 ARL14EPLP0DKL9 152 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 RNASE2P10153 161 aaKnown RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BOP23527 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 NPPCP23582 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 S100A2P29034 98 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 GCHFRP30047 84 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 APOBEC3AP31941 199 aaPredicted RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 MC5RP33032 325 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BBP33778 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 GPX4P36969 197 aaPredicted RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 KNTC1P50748 2209 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 UCNP55089 124 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 DLX6P56179 175 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 NDUFA6P56556 154 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BDP58876 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 TAS2R45P59539 299 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST1H2BCP62807 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 GNB1P62873 340 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 CCL8P80075 99 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 ERHP84090 104 aaKnown RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 CD69Q07108 199 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST2H2BEQ16778 126 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 TMEM155Q4W5P6 130 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 UTF1Q5T230 341 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 TMEM200BQ69YZ2 307 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 CNTRLQ7Z7A1 2325 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 MRPL41Q8IXM3 137 aaKnown RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 DMRTC2Q8IXT2 367 aaPredicted RBP5.1□□□□□ -1.59
CLN3-223ENST00000566472 OR51G1Q8NGK1 321 aa5.1□□□□□ -1.59
CLN3-223ENST00000566472 OR9G1Q8NH87 305 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms