RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CEBPDP49716 269 aaPredicted RBP11□□□□□ -0.65
VPS4A-204ENST00000566354 CACNA1BQ00975 2339 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 PSG7Q13046 419 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 ALKBH6Q3KRA9 238 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 WDR31Q8NA23 367 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 SLC25A40Q8TBP6 338 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 TMEM18Q96B42 140 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 ATG101Q9BSB4 218 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 CSTL1Q9H114 145 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 PRRG2O14669 202 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 RPS20P60866 119 aaKnown RBP11□□□□□ -0.65
VPS4A-204ENST00000566354 UBE2NP61088 152 aaKnown RBP11□□□□□ -0.65
VPS4A-204ENST00000566354 SELENOTP62341 195 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 AESQ08117 197 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 CLEC12BQ2HXU8 276 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 ZNF664Q8N3J9 261 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 HSD17B10Q99714 261 aaKnown RBP11□□□□□ -0.65
VPS4A-204ENST00000566354 IGSF10Q6WRI0 2623 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 NKX6-3A6NJ46 265 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 TMPRSS2O15393 492 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 MLNRO43193 412 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 NPPCP23582 126 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 CCKARP32238 428 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 TGFBR3Q03167 851 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 BTNL3Q6UXE8 466 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 RNASE8Q8TDE3 154 aaKnown RBP10.99□□□□□ -0.65
VPS4A-204ENST00000566354 RAB1CQ92928 201 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 STARD4Q96DR4 205 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 NUDT11Q96G61 164 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 ZFP30Q9Y2G7 519 aa10.99□□□□□ -0.65
VPS4A-204ENST00000566354 DIDO1Q9BTC0 2240 aaKnown RBP10.99□□□□□ -0.65
VPS4A-204ENST00000566354 SNRPCP09234 159 aaKnown RBP10.98□□□□□ -0.65
VPS4A-204ENST00000566354 IGHV1-2P23083 117 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 GABRA2P47869 451 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 FAM53AQ6NSI3 398 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-204ENST00000566354 PRSS57Q6UWY2 283 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 LINC01551Q86U37 167 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 COQ2Q96H96 371 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 IMMP2LQ96T52 175 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 OBP2BQ9NPH6 170 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 WDR83OSQ9Y284 106 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 ZNF835Q9Y2P0 537 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 USF3Q68DE3 2245 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-204ENST00000566354 ZNF705GA8MUZ8 300 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-204ENST00000566354 LYZL6O75951 148 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 CD1BP29016 333 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 ERVFC1-1P60608 527 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 RPS16P62249 146 aaKnown RBP10.98□□□□□ -0.65
VPS4A-204ENST00000566354 Q8N7P7 452 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 PLSCR4Q9NRQ2 329 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 KCNIP2Q9NS61 270 aa10.98□□□□□ -0.65
VPS4A-204ENST00000566354 LINC00473A8K010 186 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 C15orf62A8K5M9 175 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 WNT9BO14905 357 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 CGAP01215 116 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 STAG3L3P0CL85 134 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 TIMP3P35625 211 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 CNN1P51911 297 aaKnown RBP10.97□□□□□ -0.65
VPS4A-204ENST00000566354 PRRX1P54821 245 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 Q6ZT83 130 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 C11orf53Q8IXP5 236 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 KLF14Q8TD94 323 aaPredicted RBP10.97□□□□□ -0.65
VPS4A-204ENST00000566354 EPG5Q9HCE0 2579 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 DOCK11Q5JSL3 2073 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 F6UZH7 168 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 MPDU1O75352 247 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 NBEAP1P0C6P0 100 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 GNB1P62873 340 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 FOXL1Q12952 345 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 SPINK9Q5DT21 86 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 FAM78BQ5VT40 261 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 ACP7Q6ZNF0 438 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 TXNDC17Q9BRA2 123 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 PROCRQ9UNN8 238 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 ZFYVE26Q68DK2 2539 aa10.97□□□□□ -0.65
VPS4A-204ENST00000566354 A0A1W2PPV4 95 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 IFNL4K9M1U5 179 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 DEFA4P12838 97 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 IL3RAP26951 378 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 CEACAM8P31997 349 aaPredicted RBP10.96□□□□□ -0.65
VPS4A-204ENST00000566354 HTD2P86397 168 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 CST9LP1Q5W188 147 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 ZNF826PQ6ZT77 177 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 TMEM144Q7Z5S9 345 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 CXorf67Q86X51 503 aaPredicted RBP10.96□□□□□ -0.65
VPS4A-204ENST00000566354 SMIM12Q96EX1 92 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 QTRT1Q9BXR0 403 aaKnown RBP10.96□□□□□ -0.65
VPS4A-204ENST00000566354 CXXC4Q9H2H0 198 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 MSL2Q9HCI7 577 aa10.96□□□□□ -0.65
VPS4A-204ENST00000566354 FAM90A9PA6NNJ1 464 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 SIAH2O43255 324 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 NDUFB4O95168 129 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 MPV17P39210 176 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 RPL15P61313 204 aaKnown RBP10.96□□□□□ -0.66
VPS4A-204ENST00000566354 IQCJQ1A5X6 159 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 Q6ZR03 302 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 MRPL41Q8IXM3 137 aaKnown RBP10.96□□□□□ -0.66
VPS4A-204ENST00000566354 GBGT1Q8N5D6 347 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 PSG11Q9UQ72 335 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms