RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CBLN1P23435 193 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 TAS2R31P59538 309 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 CATR1Q13166 79 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 TIMM50Q3ZCQ8 353 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 SLC16A13Q7RTY0 426 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 DEFB125Q8N687 156 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 GVQW1Q8N7I0 195 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 OR5H6Q8NGV6 325 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 CXorf58Q96LI9 332 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 SLC5A7Q9GZV3 580 aa14.11□□□□□ -0.15
CLN3-218ENST00000565688 LOC100506127A0A0U1RQW1 187 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 ZNF320A2RRD8 509 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 A8MWP6 167 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 ATP6V1G2O95670 118 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 IGHV3-23P01764 117 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 FGF2P09038 288 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 CLEC2LP0C7M8 214 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 CBX5P45973 191 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 CD300LFQ8TDQ1 290 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 WDR89Q96FK6 387 aaPredicted RBP14.1□□□□□ -0.15
CLN3-218ENST00000565688 SRSF8Q9BRL6 282 aaKnown RBP14.1□□□□□ -0.15
CLN3-218ENST00000565688 AUNIPQ9H7T9 357 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 SRD5A3Q9H8P0 318 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 RETNQ9HD89 108 aa14.1□□□□□ -0.15
CLN3-218ENST00000565688 GAR1Q9NY12 217 aaKnown RBP14.1□□□□□ -0.15
CLN3-218ENST00000565688 IGLV11-55A0A075B6I3 123 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 RBMY1BA6NDE4 496 aaKnown RBP14.09□□□□□ -0.15
CLN3-218ENST00000565688 RBMY1EA6NEQ0 496 aaKnown RBP14.09□□□□□ -0.15
CLN3-218ENST00000565688 SULT1C2O00338 296 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 HPRT1P00492 218 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 RBMY1DP0C7P1 496 aaKnown RBP14.09□□□□□ -0.15
CLN3-218ENST00000565688 PTHLHP12272 177 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 NQO2P16083 231 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 OR2B8PP59922 312 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 POU2AF1Q16633 256 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 ZNF57Q68EA5 555 aaPredicted RBP14.09□□□□□ -0.15
CLN3-218ENST00000565688 GIMAP1Q8WWP7 306 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 BORCS5Q969J3 196 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 COMMD5Q9GZQ3 224 aa14.09□□□□□ -0.15
CLN3-218ENST00000565688 TMEM213A2RRL7 107 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 REG1AP05451 166 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 CLEC3BP05452 202 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 EDN2P20800 178 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 ANKRD55Q3KP44 614 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 OR5AP2Q8NGF4 316 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 CACNG8Q8WXS5 425 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 MARC2Q969Z3 335 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 RNF167Q9H6Y7 350 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 PLEKHA2Q9HB19 425 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 THYN1Q9P016 225 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 S4R3C0 116 aa14.08□□□□□ -0.16
CLN3-218ENST00000565688 MFSD2BA6NFX1 497 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 CGB1A6NKQ9 187 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 UPK2O00526 184 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 CYB5BO43169 146 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 MYOD1P15172 320 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 FXYD4P59646 89 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 THOC7Q6I9Y2 204 aaKnown RBP14.07□□□□□ -0.16
CLN3-218ENST00000565688 TMEM61Q8N0U2 210 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 UXS1Q8NBZ7 420 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 FAM110AQ9BQ89 295 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 WFDC10AQ9H1F0 79 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 MLXQ9UH92 298 aa14.07□□□□□ -0.16
CLN3-218ENST00000565688 IGLC7A0M8Q6 106 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 HERV-K104P61576 105 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 ZNF818PQ6ZRF7 136 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 TMEM17Q86X19 198 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 CROCCP3Q8IVE0 287 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 DMBX1Q8NFW5 382 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 OR52B4Q8NGK2 314 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 QTRT1Q9BXR0 403 aaKnown RBP14.06□□□□□ -0.16
CLN3-218ENST00000565688 IFT46Q9NQC8 304 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 TMEM140Q9NV12 185 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 COMMD9Q9P000 198 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 DNAH1Q9P2D7 4330 aa14.06□□□□□ -0.16
CLN3-218ENST00000565688 TRAV25A0A0B4J276 109 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 XRCC3O43542 346 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 JTBO76095 146 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 PTBP1P26599 531 aaKnown RBP eCLIP14.05□□□□□ -0.16
CLN3-218ENST00000565688 ELLP55199 621 aaPredicted RBP14.05□□□□□ -0.16
CLN3-218ENST00000565688 NEDD8Q15843 81 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 AADACL3Q5VUY0 350 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 HSD17B13Q7Z5P4 300 aaPredicted RBP14.05□□□□□ -0.16
CLN3-218ENST00000565688 OR51H1Q8NH63 302 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 ZNF502Q8TBZ5 544 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 S100A16Q96FQ6 103 aaKnown RBP14.05□□□□□ -0.16
CLN3-218ENST00000565688 UFC1Q9Y3C8 167 aa14.05□□□□□ -0.16
CLN3-218ENST00000565688 TRAV3A0A0B4J244 114 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 FCER2P06734 321 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 C8orf88P0DMB2 117 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 GPR183P32249 361 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 ERVK-16P61578 105 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 TM4SF20Q53R12 229 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 PLET1Q6UQ28 207 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 VN1R17PQ8TDU5 208 aa14.04□□□□□ -0.16
CLN3-218ENST00000565688 MRPL27Q9P0M9 148 aaKnown RBP14.04□□□□□ -0.16
CLN3-218ENST00000565688 SCAF4O95104 1147 aaKnown RBP14.03□□□□□ -0.16
CLN3-218ENST00000565688 S1PR2O95136 353 aa14.03□□□□□ -0.16
CLN3-218ENST00000565688 TRAPPC2P0DI81 140 aa14.03□□□□□ -0.16
CLN3-218ENST00000565688 TRAPPC2BP0DI82 140 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms