RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 DUSP5Q16690 384 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 PAGE3Q5JUK9 113 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 Q6AWC8 147 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 MORN3Q6PF18 240 aaPredicted RBP4.09□□□□□ -1.75
VPS35-205ENST00000563984 COX8CQ7Z4L0 72 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 C17orf64Q86WR6 236 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 PRR22Q8IZ63 422 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 LINC01561Q8N1V8 128 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 NUP35Q8NFH5 326 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 ATP6V0E2Q8NHE4 81 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 ZPLD1Q8TCW7 415 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 STARD4Q96DR4 205 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 UBE2E2Q96LR5 201 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 DCTN5Q9BTE1 182 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 PARLQ9H300 379 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 DUSP21Q9H596 190 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 ST20Q9HBF5 79 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 CLCF1Q9UBD9 225 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 MPC1Q9Y5U8 109 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 NFAT5O94916 1531 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 COL22A1Q8NFW1 1626 aaPredicted RBP4.09□□□□□ -1.76
VPS35-205ENST00000563984 RBBP6Q7Z6E9 1792 aaKnown RBP4.09□□□□□ -1.76
VPS35-205ENST00000563984 KIDINS220Q9ULH0 1771 aa4.09□□□□□ -1.76
VPS35-205ENST00000563984 KIF26BQ2KJY2 2108 aa4.09□□□□□ -1.76
VPS35-205ENST00000563984 TRAV26-2A0A0B4J265 109 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 hDV102S1A0JD36 115 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 MYBPHLA2RUH7 354 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 FAM220BPB1ANY3 271 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 TMEM250H0YL14 139 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 CCL21O00585 134 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 XKRYO14609 159 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 MRPS12O15235 138 aaKnown RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 EDIL3O43854 480 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 HYPMO75409 117 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 UBL3O95164 117 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 CGAP01215 116 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 P01737 135 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 LAMB1P07942 1786 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 GLI3P10071 1580 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 CTRLP40313 264 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 POLR2JP52435 117 aaKnown RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 RPS23P62266 143 aaKnown RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 SEC11AP67812 179 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 SLC25A11Q02978 314 aaKnown RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 ATP7AQ04656 1500 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 CHD3Q12873 2000 aaKnown RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 ELOBQ15370 118 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 SPHKAPQ2M3C7 1700 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 SPATA45Q537H7 98 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 FAM201AQ5SY85 155 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 Q6ZRG5 221 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 ZNF550Q7Z398 422 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 MMD2Q8IY49 270 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 EXOC3-AS1Q8N2X6 119 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 OR4C16Q8NGL9 310 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 OR10J6PQ8NGY7 276 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 OR4A5Q8NH83 315 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 MS4A6EQ96DS6 147 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 LINC01587Q99440 93 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 ZNF670Q9BS34 389 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 GREB1LQ9C091 1923 aaPredicted RBP4.08□□□□□ -1.76
VPS35-205ENST00000563984 CXXC4Q9H2H0 198 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 GLIPR2Q9H4G4 154 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 KCNIP2Q9NS61 270 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 AIG1Q9NVV5 245 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 TMEM242Q9NWH2 141 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 OR5V1Q9UGF6 321 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 FIS1Q9Y3D6 152 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 LINC00312Q9Y6C7 94 aa4.08□□□□□ -1.76
VPS35-205ENST00000563984 ARHGEF28Q8N1W1 1705 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 COL16A1Q07092 1604 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 TRBV24-1A0A075B6N3 115 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 SNRPGP15A8MWD9 76 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 SMKR1H3BMG3 65 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 H3BRM9 83 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 CCL24O00175 119 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 RAMP1O60894 148 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 DEDDO75618 318 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 PMS2P2O95744 297 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 IGHG2P01859 326 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 IGHMP01871 453 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 FGF6P10767 208 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 GABRG2P18507 467 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 RPS4Y1P22090 263 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 PPP1CCP36873 323 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 RBMXP38159 391 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 OPRK1P41145 380 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 CCR2P41597 374 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 LPAR6P43657 344 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 TAS2R19P59542 299 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 YPEL3P61236 119 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 LOXL1Q08397 574 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 Q0VG73 95 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 PNRC1Q12796 327 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 Q499Y3 187 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 TECRLQ5HYJ1 363 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 UBE2NLQ5JXB2 153 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 FAM182AQ5T1J6 154 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 AADACL3Q5VUY0 350 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 Q5XG85 94 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms