RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 S100PP25815 95 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RUNX1Q01196 453 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 FLI1Q01543 452 aaPredicted RBP7.62□□□□□ -1.19
VPS39-205ENST00000562258 PEA15Q15121 130 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RPEL1Q2QD12 228 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 OR4A47Q6IF82 309 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 ZNF529Q6P280 563 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RXFP4Q8TDU9 374 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 SOSTQ9BQB4 213 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 PRSS22Q9GZN4 317 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RPS10P5Q9NQ39 176 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 NDUFS8O00217 210 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 NPFFO15130 113 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 YPEL1O60688 119 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 SPCS3P61009 180 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 PPP1R27Q86WC6 154 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 OR1L4Q8NGR5 311 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 NPIPB3Q92617 1050 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 YPEL2Q96QA6 119 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 AAMDCQ9H7C9 122 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 TAAR5O14804 337 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 SRSF10O75494 262 aaKnown RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 ZNF137PP52743 207 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 B2MP61769 119 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 EFNB3Q15768 340 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 ADIRFQ15847 76 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 MSMPQ1L6U9 139 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 KLF17Q5JT82 389 aaPredicted RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 RBPMS2Q6ZRY4 209 aaKnown RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 OR4X2Q8NGF9 303 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 FAM216AQ8WUB2 273 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 JMJD8Q96S16 334 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 KIAA1549Q9HCM3 1950 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 MGAM2Q2M2H8 2515 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 WNT2P09544 360 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 RBKSQ9H477 322 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 OPN4Q9UHM6 478 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 NAGKQ9UJ70 344 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 NBR2O15453 112 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 SAA1P0DJI8 122 aaPredicted RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 GPR183P32249 361 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 BMI1P35226 326 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 TMEM155Q4W5P6 130 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 Q6P435 159 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 SSX7Q7RTT5 188 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 SELENOHQ8IZQ5 122 aaKnown RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 STXBP6Q8NFX7 210 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 OR11H7Q8NGC8 314 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 OR4P4Q8NGL7 312 aa7.61□□□□□ -1.19
VPS39-205ENST00000562258 OSR1Q8TAX0 266 aaPredicted RBP7.61□□□□□ -1.19
VPS39-205ENST00000562258 TRAV20A0A0B4J274 112 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 S100A9P06702 114 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 MPZP25189 248 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 UBE2L3P68036 154 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 RHEBQ15382 184 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 GBGT1Q8N5D6 347 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 OR10G4Q8NGN3 311 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 OR10G9Q8NGN4 311 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 OR10G7Q8NGN6 311 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 ST8SIA2Q92186 375 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 FBXL7Q9UJT9 491 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 SPP1P10451 314 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 EWSR1Q01844 656 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS39-205ENST00000562258 ATP5G2Q06055 141 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 TMEM252Q8N6L7 170 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 SRSF12Q8WXF0 261 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 ARPC1AQ92747 370 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 OR5AC2Q9NZP5 309 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 IGHV3OR16-12A0A075B7B8 117 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 IGKV3-20P01619 116 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 HKR1P10072 659 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 HLA-GP17693 338 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 PRTN3P24158 256 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 S100A4P26447 101 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 PAFAH1B2P68402 229 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 TNFRSF9Q07011 255 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 TEPPQ6URK8 271 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 C8orf46Q8TAG6 207 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 LSM10Q969L4 123 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 GON7Q9BXV9 100 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 U3KQ87 197 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 ZNF106Q9H2Y7 1883 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 MPTX1A8MV57 137 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 MMP23AO75900 390 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 CD8AP01732 235 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 MBPP02686 304 aaPredicted RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 HSPB1P04792 205 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 SLC25A5P05141 298 aaKnown RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 RD3LP0DJH9 198 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 FCGR2BP31994 310 aaPredicted RBP7.6□□□□□ -1.19
VPS39-205ENST00000562258 HLA-DRB5Q30154 266 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 CLEC19AQ6UXS0 136 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 KIR3DL3Q8N743 410 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 C3orf56Q8N813 242 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 GSX2Q9BZM3 304 aa7.6□□□□□ -1.19
VPS39-205ENST00000562258 AKAP13Q12802 2813 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 C7orf66A4D0T2 115 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 C22orf46C9J442 243 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 CA2P00918 260 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 MBP02144 154 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 124.8 ms