RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SELENOHQ8IZQ5 122 aaKnown RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SOSTQ9BQB4 213 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM204Q9BSN7 226 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 GSX2Q9BZM3 304 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 UNKLQ9H9P5 680 aaKnown RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 CLEC5AQ9NY25 188 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 OPN4Q9UHM6 478 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 LRBAP50851 2863 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 ITPR2Q14571 2701 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 A0A0B4J293 547 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 C7orf66A4D0T2 115 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 H0Y980 276 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 NPFFO15130 113 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 ATP6V1G1O75348 118 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 KBTBD11O94819 623 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 MBPP02686 304 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 CD74P04233 296 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 HTN1P15515 57 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SLC25A16P16260 332 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 BTCP35070 178 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 GATA4P43694 442 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 PPT1P50897 306 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 RND2P52198 227 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 TPPP2P59282 170 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SRSF4Q08170 494 aaKnown RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 HLA-DRB5Q30154 266 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 DHRS7BQ6IAN0 325 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SLC35E3Q7Z769 313 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 KCNRGQ8N5I3 272 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 UQCC1Q9NVA1 299 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 PITPNC1Q9UKF7 332 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 TIMM8BQ9Y5J9 83 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 NUPL2O15504 423 aaKnown RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 YPEL1O60688 119 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 CA2P00918 260 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 DUTP33316 252 aaKnown RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 LOXL3P58215 753 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF266Q14584 549 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 NSUN5P1Q3KNT7 163 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF66Q6ZN08 573 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 FAM216AQ8WUB2 273 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 CIB3Q96Q77 187 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 YPEL2Q96QA6 119 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 RSG1Q9BU20 258 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TPPP3Q9BW30 176 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 GHITMQ9H3K2 345 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 RBKSQ9H477 322 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 GNG13Q9P2W3 67 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 PRNDQ9UKY0 176 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV1-3A0A0C4DH29 117 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 COX7A2P2O60397 106 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 GOSR1O95249 250 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 MT-CO2P00403 227 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV2-70P01814 119 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV2-5P01817 119 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TRGV3P03979 118 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 CD55P08174 381 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF735P0CB33 412 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TRAPPC2P0DI81 140 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TRAPPC2BP0DI82 140 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 HTD2P86397 168 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM187Q14656 261 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 HMGN3Q15651 99 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM155Q4W5P6 130 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 MMD2Q8IY49 270 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF383Q8NA42 475 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 SLC24A4Q8NFF2 622 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 LHFPL5Q8TAF8 219 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 RBM14Q96PK6 669 aaKnown RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ARV1Q9H2C2 271 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 SERTAD4Q9NUC0 356 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 RABAC1Q9UI14 185 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF107Q9UII5 783 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 CGB1A6NKQ9 187 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 C17orf58Q2M2W7 97 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 OR2T6Q8NHC8 308 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 C10orf105Q8TEF2 133 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ST6GAL2Q96JF0 529 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 NOL4LQ96MY1 436 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 GSX1Q9H4S2 264 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-209ENST00000560637 THYN1Q9P016 225 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 FBLN5Q9UBX5 448 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 ZFHX4Q86UP3 3567 aa4.44□□□□□ -1.7
VPS13C-209ENST00000560637 A0A0D9SG52 128 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF785A8K8V0 405 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 C1QBP02746 253 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 OR9G9P0C7N8 305 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 PRTN3P24158 256 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 KIR2DS2P43631 304 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TFF3Q07654 80 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DAZAP2Q15038 168 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FFAR4Q5NUL3 377 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FAM120AOSQ5T036 256 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 BTNL8Q6UX41 500 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 BCL6BQ8N143 479 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 ZBTB34Q8NCN2 500 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 SRSF12Q8WXF0 261 aaKnown RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 NPIPB3Q92617 1050 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 NMES1Q9C002 83 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TPSG1Q9NRR2 321 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms