RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	OR51T1	Q8NGJ9	327 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	PTH2	Q96A98	100 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C12orf43	Q96C57	262 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	OPTN	Q96CV9	577 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TMA16	Q96EY4	203 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		Q96M85	177 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	NAA38	Q9BRA0	125 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	DOHH	Q9BU89	302 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MRPL32	Q9BYC8	188 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	OR8D2	Q9GZM6	311 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	GPR84	Q9NQS5	396 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	XPNPEP1	Q9NQW7	623 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C8orf4	Q9NR00	106 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	FGFR1OP2	Q9NVK5	253 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	NKIRAS1	Q9NYS0	192 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	DOK5	Q9P104	306 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	ANGPT4	Q9Y264	503 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TIMM9	Q9Y5J7	89 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	LHFPL6	Q9Y693	200 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	PXMP4	Q9Y6I8	212 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	GPR98	Q8WXG9	6306 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SMARCA4	P51532	1647 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RTTN	Q86VV8	2226 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MALRD1	Q5VYJ5	2156 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TONSL	Q96HA7	1378 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	PTPRS	Q13332	1948 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	EIF4G1	Q04637	1599 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TRBV10-2	A0A0K0K1G8	114 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TMEM269	A0A1B0GVZ9	245 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	MEIS3P1	A6NDR6	274 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	INMT-MINDY4	F8WBC2	141 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TRAPPC2L	H3BP13	241 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435		H3BT86	120 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435		I3L521	148 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435		M0QZ92	97 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	KLRC4	O43908	158 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	NIPSNAP2	O75323	286 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	IFNA5	P01569	189 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	APOE	P02649	317 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ANG	P03950	147 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CLPS	P04118	112 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	PRM2	P04554	102 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TPM3	P06753	285 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	MSMB	P08118	114 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	SRP19	P09132	144 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	FAM228B	P0C875	321 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	LYNX1	P0DP58	116 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H1E	P10412	219 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	KCNE1	P15382	129 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	GPX2	P18283	190 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	RPS12	P25398	132 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	MSN	P26038	577 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	AKR1C3	P42330	323 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	MAP2K4	P45985	399 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CSN1S1	P47710	185 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CDK9	P50750	372 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF80	P51504	273 aa	Predicted RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	BLVRA	P53004	296 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	OR4D2	P58180	307 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TMEM258	P61165	79 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	AP1S1	P61966	158 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H4A	P62805	103 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	UBE2I	P63279	158 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TPM4	P67936	248 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CCL20	P78556	96 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	FABP9	Q0Z7S8	132 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	OR2F1	Q13607	317 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	PMAIP1	Q13794	54 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	COTL1	Q14019	142 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	NUMA1	Q14980	2115 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	RSU1	Q15404	277 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST3H3	Q16695	136 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	GUK1	Q16774	197 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	IMPG1	Q17R60	797 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TMEM155	Q4W5P6	130 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CDKL4	Q5MAI5	379 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	IBA57	Q5T440	356 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	OGFRL1	Q5TC84	451 aa	Predicted RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	LPCAT4	Q643R3	524 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	C5orf46	Q6UWT4	87 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF705A	Q6ZN79	300 aa	Predicted RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	FP248	Q71RG6	208 aa	Predicted RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	SLC36A1	Q7Z2H8	476 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	KTN1-AS1	Q86SY8	53 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	SLC51B	Q86UW2	128 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	COMMD7	Q86VX2	200 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	DHFR2	Q86XF0	187 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	GID4	Q8IVV7	300 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	C10orf126	Q8N4M7	172 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	OR8B3	Q8NGG8	313 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ACOT12	Q8WYK0	555 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ANKRD7	Q92527	254 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TESC	Q96BS2	214 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	DIRAS2	Q96HU8	199 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ARL5B	Q96KC2	179 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CNBD2	Q96M20	576 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ERMAP	Q96PL5	475 aa	Predicted RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	NMNAT3	Q96T66	252 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	SPZ1	Q9BXG8	430 aa		0.21	□□□□□ -2.38

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