RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SLC35D1Q9NTN3 355 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 KIR2DL5BA0A0G2JN68 375 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 KIR2DL5BA0A0G2JPC4 375 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 K7EN84 100 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 HSBP1O75506 76 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 PDLIM4P50479 330 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 PSG7Q13046 419 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 ZNF497Q6ZNH5 498 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 MIR17HGQ75NE6 70 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 KIR2DL5AQ8N109 375 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 STRADBQ9C0K7 418 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 POLDIP2Q9Y2S7 368 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 ARL2-SNX15V9GYD0 113 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 NAV3Q8IVL0 2385 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 COL4A2P08572 1712 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 HELTA6NFD8 242 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 C15orf62A8K5M9 175 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 ARR3P36575 388 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 TRAT1Q6PIZ9 186 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 MPC1Q9Y5U8 109 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 M0QZ24 198 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 MLANAQ16655 118 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 TBC1D28Q2M2D7 210 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 TIGITQ495A1 244 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 TREML4Q6UXN2 200 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 Q6ZSR3 168 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 KCNIP2Q9NS61 270 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 B4GALT7Q9UBV7 327 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 PTPRZ1P23471 2315 aaPredicted RBP9.44□□□□□ -0.9
LDLR-208ENST00000558518 IGFBP2P18065 325 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 SLC24A4Q8NFF2 622 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 OR4C5Q8NGB2 326 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 RNASE8Q8TDE3 154 aaKnown RBP9.44□□□□□ -0.9
LDLR-208ENST00000558518 VPS25Q9BRG1 176 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 H3BTX0 84 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 SNAI2O43623 268 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 APELAP0DMC3 54 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 GCHFRP30047 84 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 FOXA3P55318 350 aaPredicted RBP9.44□□□□□ -0.9
LDLR-208ENST00000558518 PAFAH1B2P68402 229 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 FAM201AQ5SY85 155 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 ZC2HC1AQ96GY0 325 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 MGST2Q99735 147 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 TIMM9Q9Y5J7 89 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 KMT2EQ8IZD2 1858 aa9.44□□□□□ -0.9
LDLR-208ENST00000558518 AKAP6Q13023 2319 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 PIGBOS1A0A0B4J2F0 54 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 CXorf1O96002 111 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 MPV17P39210 176 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 STPG3Q8N7X2 389 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 MAFAQ8NHW3 353 aaPredicted RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 PMCHL2Q9BQD1 86 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 ZNF331Q9NQX6 463 aaPredicted RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 IL36BQ9NZH7 164 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 LAMTOR2Q9Y2Q5 125 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 DPRXA6NFQ7 191 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 USF1P22415 310 aaPredicted RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 OR1C1Q15619 314 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 COLCA1Q6ZS62 124 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 SAXO1Q8IYX7 474 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 PIEZO2Q9H5I5 2752 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 SH2D7A6NKC9 451 aaPredicted RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 SPINT2O43291 252 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 TYMSP04818 313 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 IL6RP08887 468 aaPredicted RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 MFAP2P55001 183 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 LINC00310P59036 64 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 Q6ZS49 121 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 PPP1R32Q7Z5V6 425 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 ZNF355PQ9NSJ1 428 aa9.43□□□□□ -0.9
LDLR-208ENST00000558518 RIF1Q5UIP0 2472 aaKnown RBP9.43□□□□□ -0.9
LDLR-208ENST00000558518 TOX3O15405 576 aaPredicted RBP9.42□□□□□ -0.9
LDLR-208ENST00000558518 MLNRO43193 412 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 C3orf79P0CE67 100 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 PAX1P15863 534 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 ZNF137PP52743 207 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 Q6ZR03 302 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 ZNRF1Q8ND25 227 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 OR2M7Q8NG81 312 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 SAP25Q8TEE9 199 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 S1PR3Q99500 378 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 CLEC5AQ9NY25 188 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 LY6G6EA0A0G2JKS1 128 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 M0R2Z0 102 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 HOXC12P31275 282 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 GFRA1P56159 465 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 BRWD1-AS2P59051 145 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 MRPS11P82912 194 aaKnown RBP9.42□□□□□ -0.9
LDLR-208ENST00000558518 FOXF2Q12947 444 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 FOXL1Q12952 345 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 MRPL49Q13405 166 aaKnown RBP9.42□□□□□ -0.9
LDLR-208ENST00000558518 RAB31Q13636 194 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 MOB1BQ7L9L4 216 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 OR2D3Q8NGH3 330 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 RND1Q92730 232 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 TAAR6Q96RI8 345 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 GGTLC1Q9BX51 225 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 WDR83OSQ9Y284 106 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 U3KQA8 63 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 A0A1W2PN81 502 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms