RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ADIRFQ15847 76 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 SPINK9Q5DT21 86 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CT45A1Q5HYN5 189 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TGIF2LYQ8IUE0 185 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 RPRMLQ8N4K4 120 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF439Q8NDP4 499 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 SLC24A4Q8NFF2 622 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CT45A3Q8NHU0 189 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 RAX2Q96IS3 184 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 COL25A1Q9BXS0 654 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 PARLQ9H300 379 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 ZFAND3Q9H8U3 227 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CHODLQ9H9P2 273 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 NPVFQ9HCQ7 196 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM14BQ9NUH8 114 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 FKBP11Q9NYL4 201 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 RPUSD1Q9UJJ7 312 aaKnown RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF257Q9Y2Q1 563 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 URGCP-MRPS24S4R325 110 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 BDP1A6H8Y1 2624 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 OTOGLQ3ZCN5 2332 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 HEATR1Q9H583 2144 aaKnown RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TGIF2-C20orf24A0A0A6YYL0 155 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 PCP4L1A6NKN8 68 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 C11orf94C9JXX5 98 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 PRSS46E5RG02 174 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 H7BYZ3 331 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 SLC31A2O15432 143 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CXorf1O96002 111 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 S100A2P29034 98 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CDX1P47902 265 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF134P52741 427 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 FAM27E3Q08E93 113 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 SPRNQ5BIV9 151 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 OR4A47Q6IF82 309 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 FAM71F2Q6NXP2 309 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF343Q6P1L6 599 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 SLC25A48Q6ZT89 311 aaKnown RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 LYG1Q8N1E2 194 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 PRSS33Q8NF86 280 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 RPUSD4Q96CM3 377 aaKnown RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TXN2Q99757 166 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM204Q9BSN7 226 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 NGBQ9NPG2 151 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 PXMP4Q9Y6I8 212 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 A0A0G2JNJ9 132 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 C17orf100A8MU93 164 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 PPP1R2P9O14990 202 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 PAGE4O60829 102 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 APOA2P02652 100 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 GYPAP02724 150 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 CD99P14209 185 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 CCKARP32238 428 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 SRP14P37108 136 aaKnown RBP5.97□□□□□ -1.45
VPS13C-206ENST00000558338 TDGF1P3P51864 188 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 LINC00205P59089 165 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 RPL23P62829 140 aaKnown RBP5.97□□□□□ -1.45
VPS13C-206ENST00000558338 TEPPQ6URK8 271 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 PET117Q6UWS5 81 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 TCF23Q7RTU1 214 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 ASCL5Q7RTU5 278 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 Q8N7P7 452 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 CCL13Q99616 98 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 GGTLC1Q9BX51 225 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 PLEKHA3Q9HB20 300 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 SLC35D1Q9NTN3 355 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 BET1LQ9NYM9 111 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 Q9UFV3 132 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 ARL2-SNX15V9GYD0 113 aa5.97□□□□□ -1.45
VPS13C-206ENST00000558338 RAI1Q7Z5J4 1906 aaPredicted RBP5.97□□□□□ -1.45
VPS13C-206ENST00000558338 RRHO14718 337 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 HMGB3O15347 200 aaKnown RBP5.96□□□□□ -1.45
VPS13C-206ENST00000558338 TMPRSS2O15393 492 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 CLN5O75503 358 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 STAG3L2P0CL84 134 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 STAG3L3P0CL85 134 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 SELLP14151 372 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 GALR1P47211 349 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 NDUFA6P56556 154 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 RHOBP62745 196 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 PRCDQ00LT1 54 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 RBPJQ06330 500 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 FAM201AQ5SY85 155 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 KCNIP4Q6PIL6 250 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 GFRALQ6UXV0 394 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 C16orf82Q7Z2V1 217 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 DOLPP1Q86YN1 238 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 WFDC8Q8IUA0 241 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 VKORC1L1Q8N0U8 176 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF383Q8NA42 475 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 OSR1Q8TAX0 266 aaPredicted RBP5.96□□□□□ -1.45
VPS13C-206ENST00000558338 MGST2Q99735 147 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 KRTAP4-12Q9BQ66 201 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 CDIP1Q9H305 208 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 SRD5A3Q9H8P0 318 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 JKAMPQ9P055 326 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 DOK5Q9P104 306 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 SLC25A10Q9UBX3 287 aaPredicted RBP5.96□□□□□ -1.45
VPS13C-206ENST00000558338 FBXL7Q9UJT9 491 aa5.96□□□□□ -1.45
VPS13C-206ENST00000558338 LSM4Q9Y4Z0 139 aaKnown RBP5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms