RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 DEDD2Q8WXF8 326 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 S100ZQ8WXG8 99 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 TMEM230Q96A57 120 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 SPIN2AQ99865 258 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 SPIN2BQ9BPZ2 258 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 ZNF355PQ9NSJ1 428 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 MGAM2Q2M2H8 2515 aa11.19□□□□□ -0.62
USP3-205ENST00000557884 PLXNB1O43157 2135 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 A0A1B0GW64 132 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 IL6RP08887 468 aaPredicted RBP11.18□□□□□ -0.62
USP3-205ENST00000557884 MAS1LP35410 378 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 RAB9AP51151 201 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 IZUMO4Q1ZYL8 232 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 TREML4Q6UXN2 200 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 C8orf86Q6ZUL3 223 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 SGPP2Q8IWX5 399 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 OR5M8Q8NGP6 311 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 SEC22AQ96IW7 307 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 OR5B12Q96R08 314 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 CCDC32Q9BV29 185 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 ZFP57Q9NU63 452 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 COA4Q9NYJ1 87 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 PRR13Q9NZ81 148 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 NBEAL1Q6ZS30 2694 aa11.18□□□□□ -0.62
USP3-205ENST00000557884 NAP1L6A6NFF2 107 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 CENPXA8MT69 81 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 TEX22C9J3V5 150 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 SNAPC5O75971 98 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 IGKV1-5P01602 117 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 UCP1P25874 307 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 CD40LGP29965 261 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 AKR1C2P52895 323 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 TPPP2P59282 170 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 DEFA5Q01523 94 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 ZNF846Q147U1 533 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 C19orf35Q6ZS72 473 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 H2BFWTQ7Z2G1 175 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 ZNF695Q8IW36 515 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 OR4F17Q8NGA8 305 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 OR4F4Q96R69 305 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 SLC25A21Q9BQT8 299 aaPredicted RBP11.17□□□□□ -0.62
USP3-205ENST00000557884 HINT2Q9BX68 163 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 COMMD5Q9GZQ3 224 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 TMEM222Q9H0R3 208 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 GNB4Q9HAV0 340 aa11.17□□□□□ -0.62
USP3-205ENST00000557884 TET2Q6N021 2002 aaPredicted RBP11.17□□□□□ -0.62
USP3-205ENST00000557884 CGB1A6NKQ9 187 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 DBX1A6NMT0 343 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 PLA2G10O15496 165 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 PRH1P02810 166 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 TRGV3P03979 118 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 REG1AP05451 166 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 AREGP15514 252 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 BTCP35070 178 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 KIAA0141Q14154 515 aaPredicted RBP11.16□□□□□ -0.62
USP3-205ENST00000557884 DEFB136Q30KP8 78 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 ZNF491Q8N8L2 437 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 OR4A16Q8NH70 328 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 RNASE11Q8TAA1 199 aaKnown RBP11.16□□□□□ -0.62
USP3-205ENST00000557884 LHFPL5Q8TAF8 219 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 MYOZ3Q8TDC0 251 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 GLYATL2Q8WU03 294 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 TMEM68Q96MH6 324 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 DUX3Q96PT4 197 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 C7orf50Q9BRJ6 194 aaKnown RBP11.16□□□□□ -0.62
USP3-205ENST00000557884 WDR12Q9GZL7 423 aaKnown RBP11.16□□□□□ -0.62
USP3-205ENST00000557884 OR51B2Q9Y5P1 312 aa11.16□□□□□ -0.62
USP3-205ENST00000557884 TEX50A0A1B0GTY4 177 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 RBMXL2O75526 392 aaKnown RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 B3GALNT1O75752 331 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 IGHV3-11P01762 117 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 PF4P02776 101 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 CDX1P47902 265 aaPredicted RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 SUPT4H1P63272 117 aaKnown RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 DHODHQ02127 395 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 TMEM187Q14656 261 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 RBMS2Q15434 407 aaKnown RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 TMEM268Q5VZI3 342 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 SELENOHQ8IZQ5 122 aaKnown RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 OR1L8Q8NGR8 309 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 TSC22D3Q99576 134 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 QTRT1Q9BXR0 403 aaKnown RBP11.15□□□□□ -0.62
USP3-205ENST00000557884 PRNDQ9UKY0 176 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 FLVCR2Q9UPI3 526 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 KCNIP3Q9Y2W7 256 aa11.15□□□□□ -0.62
USP3-205ENST00000557884 WNK1Q9H4A3 2382 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 FBN3Q75N90 2809 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 A0A0G2JRQ6 117 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 C15orf61A6NNL5 157 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 LYRM1O43325 122 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 ATG12O94817 140 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 NDUFB6O95139 128 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 CDS2O95674 445 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 P0C879 139 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 TRAPPC2P0DI81 140 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 TRAPPC2BP0DI82 140 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 ETV3LQ6ZN32 361 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 CADM3Q8N126 398 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 CENPSQ8N2Z9 138 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 OR10W1Q8NGF6 305 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms