RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 REG1AP05451 166 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 MYOD1P15172 320 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 CTRB1P17538 263 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 SCAND1P57086 179 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 CATR1Q13166 79 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 TIMM50Q3ZCQ8 353 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 ZNF57Q68EA5 555 aaPredicted RBP8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 CTRB2Q6GPI1 263 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 OR4A47Q6IF82 309 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 GVQW1Q8N7I0 195 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 ZBTB34Q8NCN2 500 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 OR13F1Q8NGS4 319 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 OR5H6Q8NGV6 325 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 OR4A5Q8NH83 315 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 CACNG8Q8WXS5 425 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 CXorf58Q96LI9 332 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 BET1LQ9NYM9 111 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 ETV7Q9Y603 341 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 SELENOKQ9Y6D0 94 aa8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 PLECQ15149 4684 aaKnown RBP8.33□□□□□ -1.08
CCDC88C-213ENST00000557455 TRBV7-1A0A0A6YYK4 115 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 TMEM213A2RRL7 107 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 A8MWP6 167 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 SULT1C2O00338 296 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 RBFOX2O43251 390 aaKnown RBP eCLIP8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 JTBO76095 146 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 HPRT1P00492 218 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 PPYP01298 95 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 CLEC3BP05452 202 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 CLEC2LP0C7M8 214 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 TAS2R31P59538 309 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 KLK9Q2XQG4 91 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 IDNKQ5T6J7 187 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 HOGA1Q86XE5 327 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 TMEM61Q8N0U2 210 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 UXS1Q8NBZ7 420 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 SLC25A38Q96DW6 304 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 YTHDF1Q9BYJ9 559 aaKnown RBP8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 SLC5A7Q9GZV3 580 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 RNF167Q9H6Y7 350 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 DIABLOQ9NR28 239 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 MLXQ9UH92 298 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 KLK9Q9UKQ9 250 aa8.32□□□□□ -1.08
CCDC88C-213ENST00000557455 IGLV11-55A0A075B6I3 123 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 A0A0A6YYH2 397 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 LOC100506127A0A0U1RQW1 187 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 MFSD2BA6NFX1 497 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 A6NJ64 397 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 CGB1A6NKQ9 187 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 SCAF4O95104 1147 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 FCER2P06734 321 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 NQO2P16083 231 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 FXYD4P59646 89 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 OR2B8PP59922 312 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 ANKRD55Q3KP44 614 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 TM4SF20Q53R12 229 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 DMBX1Q8NFW5 382 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 OR52B4Q8NGK2 314 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 MRPS26Q9BYN8 205 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 COMMD5Q9GZQ3 224 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 THYN1Q9P016 225 aa8.31□□□□□ -1.08
CCDC88C-213ENST00000557455 TRAV3A0A0B4J244 114 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 IGLC7A0M8Q6 106 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 UPK2O00526 184 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 GPR183P32249 361 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 CBX5P45973 191 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 POU2AF1Q16633 256 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 KCTD21Q4G0X4 260 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 ZNF773Q6PK81 442 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 BTNL8Q6UX41 500 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 UNQ9165/PRO28630Q6UXU0 137 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 ZNF818PQ6ZRF7 136 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 RBPMS2Q6ZRY4 209 aaKnown RBP8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 TMEM17Q86X19 198 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 OR5AP2Q8NGF4 316 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 OR51H1Q8NH63 302 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 ZNF502Q8TBZ5 544 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 CD300LFQ8TDQ1 290 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 GIMAP1Q8WWP7 306 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 BORCS5Q969J3 196 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 MARC2Q969Z3 335 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 SRSF8Q9BRL6 282 aaKnown RBP8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 AUNIPQ9H7T9 357 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 TMEM140Q9NV12 185 aa8.3□□□□□ -1.08
CCDC88C-213ENST00000557455 LOC102724200A0A096LPH7 203 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 TRAV25A0A0B4J276 109 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 IGHV3-35A0A0C4DH35 117 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 A6NHS1 94 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 CYB5BO43169 146 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 S1PR2O95136 353 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 C8orf88P0DMB2 117 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 PTBP1P26599 531 aaKnown RBP eCLIP8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 HERV-K104P61576 105 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 ZNF585BQ52M93 769 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 AADACL3Q5VUY0 350 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 THOC7Q6I9Y2 204 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 PLET1Q6UQ28 207 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 OR1L6Q8NGR2 347 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 GGTLC1Q9BX51 225 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 QTRT1Q9BXR0 403 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms