RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PRR13Q9NZ81 148 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 NSG2Q9Y328 171 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 A0A1B0GW64 132 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 HMX3A6NHT5 357 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 E7EUB6 86 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 PLA2G10O15496 165 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 UCP1P25874 307 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 CD40LGP29965 261 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 MAS1LP35410 378 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 OR2B8PP59922 312 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 RNF152Q8N8N0 203 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 SLC25A21Q9BQT8 299 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-225ENST00000556798 PKD1L1Q8TDX9 2849 aa13.65□□□□□ -0.22
SHMT2-225ENST00000556798 CENPXA8MT69 81 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 IGKV1-5P01602 117 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 AKR1C2P52895 323 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 RBMS2Q15434 407 aaKnown RBP13.64□□□□□ -0.23
SHMT2-225ENST00000556798 IZUMO4Q1ZYL8 232 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM65Q6PI78 240 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 SGPP2Q8IWX5 399 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 KLHL30-AS1Q8NEE0 82 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 OR5M8Q8NGP6 311 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 LHFPL5Q8TAF8 219 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 FAM110DQ8TAY7 271 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-225ENST00000556798 GLYATL2Q8WU03 294 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 MS4A10Q96PG2 267 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 SPIN2AQ99865 258 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 SPIN2BQ9BPZ2 258 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 C7orf50Q9BRJ6 194 aaKnown RBP13.64□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM222Q9H0R3 208 aa13.64□□□□□ -0.23
SHMT2-225ENST00000556798 CGB1A6NKQ9 187 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 NUDT19A8MXV4 375 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 TEX22C9J3V5 150 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 LYRM1O43325 122 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 SUPT4H1P63272 117 aaKnown RBP13.63□□□□□ -0.23
SHMT2-225ENST00000556798 PRR31Q5SQ13 230 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 C8orf86Q6ZUL3 223 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 H2BFWTQ7Z2G1 175 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 COMMD5Q9GZQ3 224 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 ZNF355PQ9NSJ1 428 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 COA4Q9NYJ1 87 aa13.63□□□□□ -0.23
SHMT2-225ENST00000556798 DBX1A6NMT0 343 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 B3GALNT1O75752 331 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 SNAPC5O75971 98 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 NDUFB6O95139 128 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 RAB9AP51151 201 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 TPPP2P59282 170 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 DEFA5Q01523 94 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 DHODHQ02127 395 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 KIAA0141Q14154 515 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-225ENST00000556798 C19orf35Q6ZS72 473 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 MYOZ3Q8TDC0 251 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM68Q96MH6 324 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 ZFP57Q9NU63 452 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 FLVCR2Q9UPI3 526 aa13.62□□□□□ -0.23
SHMT2-225ENST00000556798 C15orf61A6NNL5 157 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 CDS2O95674 445 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 PRH1P02810 166 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 REG1AP05451 166 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 P0C879 139 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 AREGP15514 252 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM187Q14656 261 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 DEFB136Q30KP8 78 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM268Q5VZI3 342 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 ZNF695Q8IW36 515 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 SELENOHQ8IZQ5 122 aaKnown RBP13.61□□□□□ -0.23
SHMT2-225ENST00000556798 CADM3Q8N126 398 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 CENPSQ8N2Z9 138 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 OR4F17Q8NGA8 305 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 RNASE11Q8TAA1 199 aaKnown RBP13.61□□□□□ -0.23
SHMT2-225ENST00000556798 GALNT14Q96FL9 552 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 OR5B12Q96R08 314 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 OR4F4Q96R69 305 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 TSC22D3Q99576 134 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 HINT2Q9BX68 163 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 GNB4Q9HAV0 340 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 TBC1D24Q9ULP9 559 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 KCNIP3Q9Y2W7 256 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 OR51B2Q9Y5P1 312 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 CMYA5Q8N3K9 4069 aa13.61□□□□□ -0.23
SHMT2-225ENST00000556798 A0A0G2JRQ6 117 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 TEX50A0A1B0GTY4 177 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 UPK1BO75841 260 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 TRGV3P03979 118 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 VAMP1P23763 118 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 CDX1P47902 265 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM128Q5BJH2 165 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 TREML4Q6UXN2 200 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 ZNF491Q8N8L2 437 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 OR10W1Q8NGF6 305 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 OR4A16Q8NH70 328 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 RBPMSQ93062 196 aaKnown RBP13.6□□□□□ -0.23
SHMT2-225ENST00000556798 DUX3Q96PT4 197 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 QTRT1Q9BXR0 403 aaKnown RBP13.6□□□□□ -0.23
SHMT2-225ENST00000556798 PRNDQ9UKY0 176 aa13.6□□□□□ -0.23
SHMT2-225ENST00000556798 RBMXL2O75526 392 aaKnown RBP13.59□□□□□ -0.23
SHMT2-225ENST00000556798 ATG12O94817 140 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 FGF2P09038 288 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 ANXA3P12429 323 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 IFITM3Q01628 133 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms