RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 EFNA4P52798 201 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 SNRPEP62304 92 aaKnown RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 LINC00305Q7Z4B0 112 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 SSC4DQ8WTU2 575 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 VPS25Q9BRG1 176 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 HSPB8Q9UJY1 196 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 RBBP6Q7Z6E9 1792 aaKnown RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM14DPA8MWL7 114 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 FLVCR1-AS1Q8TAF5 88 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 MSGN1A6NI15 193 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 CBY3A6NI87 242 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 NBR2O15453 112 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 SGMS2Q8NHU3 365 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 KLK15Q9H2R5 256 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 LYRM2Q9NU23 88 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 LINC00527Q9UJ94 153 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 C1QL1O75973 258 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 NUDT3O95989 172 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 TIMP3P35625 211 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 C3orf36Q3SXR2 165 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 ZNF672Q499Z4 452 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 LYRM7Q5U5X0 104 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 OR4A47Q6IF82 309 aa6.92□□□□□ -1.3
SYNE2-220ENST00000555612 SDHCQ99643 169 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 ZMAT5Q9UDW3 170 aaKnown RBP6.92□□□□□ -1.3
SYNE2-220ENST00000555612 TRGV2A0A075B6R0 118 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 B4DEV8 164 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 M0QZK8 103 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CYB5R2Q6BCY4 276 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C20orf204Q6ZNR8 217 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 SLC25A28Q96A46 364 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C17orf98A8MV24 154 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 ICAM4Q14773 271 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CLDND2Q8NHS1 167 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C1QTNF9BB2RNN3 333 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 RRHO14718 337 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C1QTNF9P0C862 333 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CRYBB3P26998 211 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 RPS20P60866 119 aaKnown RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 MBNL2Q5VZF2 373 aaKnown RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 SP5Q6BEB4 398 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 FAM90A1Q86YD7 464 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 STHQ8IWL8 128 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CYB561D1Q8N8Q1 229 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 ST6GALNAC3Q8NDV1 305 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 NEU1Q99519 415 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 WNT10AQ9GZT5 417 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM133Q9H2Q1 129 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C5orf66Q9H5L9 145 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 ELOA3CA0A087WX78 387 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C7orf77A4D0Y5 90 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 C19orf67A6NJJ6 358 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 PTBP3O95758 552 aaKnown RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 RNASE1P07998 156 aaKnown RBP6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CYP2G1PQ6ZSU1 146 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 CEP250Q9BV73 2442 aa6.91□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM218A2RU14 115 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM8BA6NDV4 472 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 IGHV1-46P01743 117 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 CD74P04233 296 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.9□□□□□ -1.3
SYNE2-220ENST00000555612 TP53RKQ96S44 253 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 A0A0G2JNJ9 132 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 RAB24Q969Q5 203 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 IFI27L2Q9H2X8 130 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 Q9UFV3 132 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 A0A0G2JK05 382 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 FAM74A7A6NL05 159 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 MDKP21741 143 aaPredicted RBP6.9□□□□□ -1.3
SYNE2-220ENST00000555612 NMUP48645 174 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 ZNF345Q14585 488 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 LDLRAD2Q5SZI1 272 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 WDR82Q6UXN9 313 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 GTSCR1Q86UQ5 136 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 PRO1933Q9H354 126 aa6.9□□□□□ -1.3
SYNE2-220ENST00000555612 TRGC1P0CF51 173 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 Q0VFX4 171 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 TMEM187Q14656 261 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 PLPPR1Q8TBJ4 325 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 WBP1Q96G27 269 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 M0R381 172 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 WNT2P09544 360 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 C12orf57Q99622 126 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 H7C2G1 150 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 IL18BPO95998 194 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 F12P00748 615 aaPredicted RBP6.9□□□□□ -1.31
SYNE2-220ENST00000555612 ZNF343Q6P1L6 599 aa6.9□□□□□ -1.31
SYNE2-220ENST00000555612 SAA2-SAA4A0A096LPE2 208 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SAP30O75446 220 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SAA2P0DJI9 122 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 MYOD1P15172 320 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 FOXG1P55316 489 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 MEIG1Q5JSS6 88 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 MRPL32Q9BYC8 188 aaKnown RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SELENOKQ9Y6D0 94 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 LOC285556D6RIA3 1793 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 J3QKU1 62 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 GCGP01275 180 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 RNASE4P34096 147 aaKnown RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 MEF2BQ02080 365 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms