RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SSX9Q7RTT3 188 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 GPR141Q7Z602 305 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 FANCD2OSQ96PS1 177 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 TMEM140Q9NV12 185 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 SMAD5-AS1Q9Y6J3 95 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 ANKRD34BA5PLL1 514 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 MARCH11A6NNE9 402 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 BMPR1BO00238 502 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 RLN1P04808 185 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 GP9P14770 177 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 HLA-DMAP28067 261 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 RPEL1Q2QD12 228 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 C15orf32Q32M92 178 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 HSD17B13Q7Z5P4 300 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 SNX29P2Q8IUI4 249 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 DGCR14Q96DF8 476 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 RSRP1Q9BUV0 290 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 HRASLSQ9HDD0 168 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 DMRT1Q9Y5R6 373 aa12.25□□□□□ -0.45
CCDC88C-209ENST00000554872 IGLV11-55A0A075B6I3 123 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 IGLC7A0M8Q6 106 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 DPPA5A6NC42 116 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 LY86O95711 162 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 PRH1P02810 166 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 AREGP15514 252 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 PTBP1P26599 531 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 S100GP29377 79 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 SYNJ2BPP57105 145 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 ERVK-16P61578 105 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 DEFA5Q01523 94 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 SLC38A6Q8IZM9 456 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 RAB2BQ8WUD1 216 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 QTRT1Q9BXR0 403 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 COMMD5Q9GZQ3 224 aa12.24□□□□□ -0.45
CCDC88C-209ENST00000554872 OR2J3O76001 311 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 MECP2P51608 486 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 TSPAN5P62079 268 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 ZNF585BQ52M93 769 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 C11orf87Q6NUJ2 197 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 ARRDC1Q8N5I2 433 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 DMBX1Q8NFW5 382 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 OR2K2Q8NGT1 345 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 PEMTQ9UBM1 199 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 MTFP1Q9UDX5 166 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 FBXL7Q9UJT9 491 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 TENM3Q9P273 2699 aa12.23□□□□□ -0.45
CCDC88C-209ENST00000554872 STAB2Q8WWQ8 2551 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 TRAV3A0A0B4J244 114 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 A8MZ25 164 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 FAM25AB3EWG3 89 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 FAM25CB3EWG5 89 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 FAM25GB3EWG6 89 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 H0Y980 276 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 LGALS9O00182 355 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 CSN3P07498 182 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 TMBIM6P55061 237 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 MRPS10P82664 201 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 SSBP1Q04837 148 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 LHFPL1Q86WI0 220 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 FCAMRQ8WWV6 532 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 ZNF486Q96H40 463 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 CCDC140Q96MF4 163 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 RABL2AQ9UBK7 228 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 EXTL2Q9UBQ6 330 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 RABL2BQ9UNT1 228 aa12.22□□□□□ -0.45
CCDC88C-209ENST00000554872 TRBV7-1A0A0A6YYK4 115 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 GGCTO75223 188 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 RND3P61587 244 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 RNASE10Q5GAN6 216 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 GPHB5Q86YW7 130 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 OR1L8Q8NGR8 309 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 OR52I2Q8NH67 350 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 CXorf58Q96LI9 332 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 ABHD1Q96SE0 405 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 ATP6V0BQ99437 205 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 TSC22D3Q99576 134 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 THAP7Q9BT49 309 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 MIXL1Q9H2W2 232 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 CCDC59Q9P031 241 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 KLK11Q9UBX7 282 aa12.21□□□□□ -0.45
CCDC88C-209ENST00000554872 CYB5BO43169 146 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 NDUFB8O95169 186 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 CD74P04233 296 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 TRAPPC2P0DI81 140 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 TRAPPC2BP0DI82 140 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 MYOD1P15172 320 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 LPAR6P43657 344 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 SPCS2Q15005 226 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 LCN12Q6JVE5 192 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 Q8N1Y9 231 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 Q8N402 240 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 GDPD1Q8N9F7 314 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 OR5B3Q8NH48 314 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 EEF1AKMT3Q96AZ1 226 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 NDUFA4L2Q9NRX3 87 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 TMEM14BQ9NUH8 114 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 FKBP11Q9NYL4 201 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 THYN1Q9P016 225 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 PRNDQ9UKY0 176 aa12.2□□□□□ -0.46
CCDC88C-209ENST00000554872 TEX50A0A1B0GTY4 177 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms