RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FAM25CB3EWG5 89 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 FAM25GB3EWG6 89 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 UPK2O00526 184 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 CTDSP2O14595 271 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 MPPED1O15442 326 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 TPPPO94811 219 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 RLN1P04808 185 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 CRYGCP07315 174 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 AREGP15514 252 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 NQO2P16083 231 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 HLA-GP17693 338 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 ZP3P21754 424 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 F2RP25116 425 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 OR2B8PP59922 312 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 RPL8P62917 257 aaKnown RBP7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 RHOGP84095 191 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 RGS21Q2M5E4 152 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF585BQ52M93 769 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 VAX1Q5SQQ9 334 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 IL34Q6ZMJ4 242 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 C19orf35Q6ZS72 473 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 OR52I2Q8NH67 350 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 FYTTD1Q96QD9 318 aaKnown RBP7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 ABHD1Q96SE0 405 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 AIFM2Q9BRQ8 373 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 EXTL2Q9UBQ6 330 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 PEF1Q9UBV8 284 aaKnown RBP7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 KLK11Q9UBX7 282 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF256Q9Y2P7 627 aaPredicted RBP7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF257Q9Y2Q1 563 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 FAM223BA6NKX1 122 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 M0QYG6 137 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 GPR31O00270 319 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 SAP30O75446 220 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 CTRB1P17538 263 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 UCP3P55916 312 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 TSPAN5P62079 268 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 ATP5G2Q06055 141 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 CTRB2Q6GPI1 263 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 SLC25A42Q86VD7 318 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 FAM223AQ8IWN6 122 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 NECAP1Q8NC96 275 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 OR6Q1Q8NGQ2 317 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 FCAMRQ8WWV6 532 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 FANCD2OSQ96PS1 177 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 B9D2Q9BPU9 175 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 RSRP1Q9BUV0 290 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 HRASLSQ9HDD0 168 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 TMEM140Q9NV12 185 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 COMMD9Q9P000 198 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 CCDC59Q9P031 241 aaKnown RBP7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 MTFP1Q9UDX5 166 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 DMRT1Q9Y5R6 373 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 TNCP24821 2201 aa7.86□□□□□ -1.15
CCDC88C-206ENST00000553437 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 BMPR1BO00238 502 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 OR2J3O76001 311 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 FGF2P09038 288 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 RPA2P15927 270 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 PSMB6P28072 239 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 LPAR6P43657 344 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 EXOSC2Q13868 293 aaKnown RBP7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 PHLDA2Q53GA4 152 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 RNASE12Q5GAN4 147 aaKnown RBP7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 LHFPL1Q86WI0 220 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 LAX1Q8IWV1 398 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 CMTM1Q8IZ96 169 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 CADM3Q8N126 398 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 CENPSQ8N2Z9 138 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 OR4C12Q96R67 309 aa7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 SLIRPQ9GZT3 109 aaKnown RBP7.85□□□□□ -1.15
CCDC88C-206ENST00000553437 IGLC7A0M8Q6 106 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 MARCH11A6NNE9 402 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 NDUFB8O95169 186 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 IGLV1-51P01701 117 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 CD74P04233 296 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 CD3DP04234 171 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 SPNP16150 400 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 SYNJ2BPP57105 145 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 C15orf32Q32M92 178 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 LCE2CQ5TA81 110 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 LPCAT3Q6P1A2 487 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 SLC38A6Q8IZM9 456 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 DMBX1Q8NFW5 382 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 OR4D10Q8NGI6 311 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 OR9G4Q8NGQ1 327 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 MCFD2Q8NI22 146 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 C15orf40Q8WUR7 153 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 ELOVL1Q9BW60 279 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 FAM212BQ9NTI7 297 aaPredicted RBP7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 FBXL7Q9UJT9 491 aa7.84□□□□□ -1.15
CCDC88C-206ENST00000553437 TENM3Q9P273 2699 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 IGLV11-55A0A075B6I3 123 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 TEX50A0A1B0GTY4 177 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 KRASP01116 189 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 IGKV1-39P01597 117 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 IGKV1D-39P04432 117 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 REG1AP05451 166 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 CSN3P07498 182 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 GP9P14770 177 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms