RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 TRBV7-1A0A0A6YYK4 115 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 ZNF320A2RRD8 509 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 C2orf70A6NJV1 201 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 SULT1C2O00338 296 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 HLA-AP01891 365 aaKnown RBP9.65□□□□□ -0.86
LINC00643-202ENST00000553426 AREGP15514 252 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 BRWD1-AS2P59051 145 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 DEFB114Q30KQ6 69 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 SLC16A13Q7RTY0 426 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 TMEM17Q86X19 198 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 DMBX1Q8NFW5 382 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 OR5AP2Q8NGF4 316 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 IL17DQ8TAD2 202 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 GIMAP1Q8WWP7 306 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 GPHA2Q96T91 129 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 KRTAP17-1Q9BYP8 105 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 RNF167Q9H6Y7 350 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 EDA2RQ9HAV5 297 aa9.65□□□□□ -0.86
LINC00643-202ENST00000553426 GAR1Q9NY12 217 aaKnown RBP9.65□□□□□ -0.86
LINC00643-202ENST00000553426 OR11H12B2RN74 326 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 E7EUB6 86 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 NDUFB8O95169 186 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 IGHV3-23P01764 117 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 FCER2P06734 321 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 PTHLHP12272 177 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 CTRB1P17538 263 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 ERVK-16P61578 105 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 AADACL3Q5VUY0 350 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 CTRB2Q6GPI1 263 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 FANCD2OSQ96PS1 177 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 VCX3AQ9NNX9 186 aa9.64□□□□□ -0.87
LINC00643-202ENST00000553426 ZNF785A8K8V0 405 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 XRCC3O43542 346 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 REG1AP05451 166 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 CBLN1P23435 193 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 OR2B8PP59922 312 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 ANKRD55Q3KP44 614 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 KCTD21Q4G0X4 260 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 ZNF57Q68EA5 555 aaPredicted RBP9.63□□□□□ -0.87
LINC00643-202ENST00000553426 THOC7Q6I9Y2 204 aaKnown RBP9.63□□□□□ -0.87
LINC00643-202ENST00000553426 ADAMTSL5Q6ZMM2 481 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 ZNF818PQ6ZRF7 136 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 C19orf35Q6ZS72 473 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 HSD17B13Q7Z5P4 300 aaPredicted RBP9.63□□□□□ -0.87
LINC00643-202ENST00000553426 CMTM1Q8IZ96 169 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 OR51H1Q8NH63 302 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 CCDC140Q96MF4 163 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 SRSF8Q9BRL6 282 aaKnown RBP9.63□□□□□ -0.87
LINC00643-202ENST00000553426 SRD5A3Q9H8P0 318 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 PLEKHA2Q9HB19 425 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 ZC4H2Q9NQZ6 224 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 EHFQ9NZC4 300 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 S4R3C0 116 aa9.63□□□□□ -0.87
LINC00643-202ENST00000553426 IGLV11-55A0A075B6I3 123 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 A0A1B0GW64 132 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 MEIS3P1A6NDR6 274 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 UPK2O00526 184 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 CLEC3BP05452 202 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 FGF2P09038 288 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 CD7P09564 240 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 TAS2R46P59540 309 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 POU2AF1Q16633 256 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 KLK9Q2XQG4 91 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 UBE2NLQ5JXB2 153 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 TMEM69Q5SWH9 247 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 PLET1Q6UQ28 207 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 DEFB125Q8N687 156 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 TSPAN14Q8NG11 270 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 OR52B4Q8NGK2 314 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 MARC2Q969Z3 335 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 QTRT1Q9BXR0 403 aaKnown RBP9.62□□□□□ -0.87
LINC00643-202ENST00000553426 HIPK2Q9H2X6 1198 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 TMEM140Q9NV12 185 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 COMMD9Q9P000 198 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 KLK9Q9UKQ9 250 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 DMRT1Q9Y5R6 373 aa9.62□□□□□ -0.87
LINC00643-202ENST00000553426 LCE6AA0A183 80 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 A8MWP6 167 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 TRAPPC2P0DI81 140 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 TRAPPC2BP0DI82 140 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 MYOD1P15172 320 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 S100GP29377 79 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 RBPMS2Q6ZRY4 209 aaKnown RBP9.61□□□□□ -0.87
LINC00643-202ENST00000553426 SAMD12Q8N8I0 201 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 UXS1Q8NBZ7 420 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 OR5H2Q8NGV7 314 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 CACNG8Q8WXS5 425 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 WDR89Q96FK6 387 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-202ENST00000553426 UFC1Q9Y3C8 167 aa9.61□□□□□ -0.87
LINC00643-202ENST00000553426 TRAV3A0A0B4J244 114 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 SMIM31A0A1B0GVY4 71 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 IGLC7A0M8Q6 106 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 TMEM213A2RRL7 107 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 MFSD2BA6NFX1 497 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 MARCH11A6NNE9 402 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 SNAPC5O75971 98 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 S1PR2O95136 353 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 RLN1P04808 185 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 F2RP25116 425 aa9.6□□□□□ -0.87
LINC00643-202ENST00000553426 PTBP1P26599 531 aaKnown RBP eCLIP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms