RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZNF71Q9NQZ8 489 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 DCAF16Q9NXF7 216 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 ZNRD1Q9P1U0 126 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 TCF19Q9Y242 345 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 PKDREJQ9NTG1 2253 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 TSTD3H0UI37 97 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 OR4A8P0C604 315 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 STAG3L2P0CL84 134 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 STAG3L3P0CL85 134 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SRP14P37108 136 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 PDLIM4P50479 330 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 RPL15P61313 204 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 TRIP6Q15654 476 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 MBNL2Q5VZF2 373 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SEM1Q6ZVN7 128 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 TMEM144Q7Z5S9 345 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 MOB3BQ86TA1 216 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 OR5R1Q8NH85 324 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SGMS2Q8NHU3 365 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 OCC1Q8TAD7 63 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 RNASEH2CQ8TDP1 164 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 KCNIP2Q9NS61 270 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 JPT1Q9UK76 154 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 CSMD1Q96PZ7 3565 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 ZGRF1Q86YA3 2104 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SAA2-SAA4A0A096LPE2 208 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 GRIFINA4D1Z8 144 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 PRR33A8MZF0 331 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 AHRRA9YTQ3 701 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 M0R1B8 84 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 MGST3O14880 152 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 TMPRSS2O15393 492 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 PDE6DO43924 150 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 YPEL1O60688 119 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 TYMSP04818 313 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 FRMD6-AS1P0C7T7 363 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SAA2P0DJI9 122 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CD33P20138 364 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 OPRK1P41145 380 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CNN1P51911 297 aaKnown RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SSX2Q16385 188 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 C17orf58Q2M2W7 97 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 HLA-DRB5Q30154 266 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 AARDQ4LEZ3 155 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CT45A1Q5HYN5 189 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 BHLHA15Q7RTS1 189 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 REC114Q7Z4M0 266 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 DMRTC2Q8IXT2 367 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CISD2Q8N5K1 135 aaKnown RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CT45A3Q8NHU0 189 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 DDB2Q92466 427 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 RAB1CQ92928 201 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SNRNP40Q96DI7 357 aaKnown RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SFRP2Q96HF1 295 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 YPEL2Q96QA6 119 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 S1PR3Q99500 378 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 HINT2Q9BX68 163 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 PLSCR4Q9NRQ2 329 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CALYQ9NYX4 217 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 TRAPPC1Q9Y5R8 145 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SPAARA0A1B0GVQ0 90 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 F6UZH7 168 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 K7EN84 100 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SLC17A3O00476 420 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 ACTL6BO94805 426 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 CGAP01215 116 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 IL6RP08887 468 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 NDUFB7P17568 137 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 GNG10P50151 68 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 ERVK-16P61578 105 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 OR4A47Q6IF82 309 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 KCNIP4Q6PIL6 250 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 C1orf162Q8NEQ5 155 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-213ENST00000552720 DEFB108BQ8NET1 73 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 ITLN1Q8WWA0 313 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 ACY3Q96HD9 319 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 IMMP2LQ96T52 175 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 ELOVL5Q9NYP7 299 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 PROCRQ9UNN8 238 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 MSRB2Q9Y3D2 182 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 SLC25A15Q9Y619 301 aa6.17□□□□□ -1.42
LIMA1-213ENST00000552720 F2RL2O00254 374 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MMP23AO75900 390 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 IGFBP2P18065 325 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 GATA2P23769 480 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-213ENST00000552720 ADMP35318 185 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 RPL31P62899 125 aaKnown RBP6.16□□□□□ -1.42
LIMA1-213ENST00000552720 EFNB3Q15768 340 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 DNLZQ5SXM8 178 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 C22orf34Q6ZV56 151 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MRPL41Q8IXM3 137 aaKnown RBP6.16□□□□□ -1.42
LIMA1-213ENST00000552720 LYG1Q8N1E2 194 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 ARL6IP6Q8N6S5 226 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 STPG3Q8N7X2 389 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 SARAFQ96BY9 339 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MISP3Q96FF7 219 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 LSM4Q9Y4Z0 139 aaKnown RBP6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MDFIC2A0A1B0GVS7 189 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 C15orf61A6NNL5 157 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 A8MWP6 167 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms