RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MPPED1O15442 326 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 OR2A4O95047 310 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 IGLV2-14P01704 120 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 EDN2P20800 178 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 NFYAP23511 347 aaPredicted RBP6.4□□□□□ -1.38
USP28-215ENST00000545608 DTYMKP23919 212 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 MYL9P24844 172 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 EXOSC2Q13868 293 aaKnown RBP6.4□□□□□ -1.38
USP28-215ENST00000545608 CTF1Q16619 201 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 TIMM50Q3ZCQ8 353 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 CD300EQ496F6 205 aaPredicted RBP6.4□□□□□ -1.38
USP28-215ENST00000545608 OR2B11Q5JQS5 317 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 C22orf42Q6IC83 251 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 LINC00322Q6ZN03 302 aaPredicted RBP6.4□□□□□ -1.38
USP28-215ENST00000545608 GTSCR1Q86UQ5 136 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 LYSMD2Q8IV50 215 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 TTC9CQ8N5M4 171 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 ZNF645Q8N7E2 425 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 DYNC2LI1Q8TCX1 351 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 CENPOQ9BU64 300 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 ST6GALNAC5Q9BVH7 336 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 RETNQ9HD89 108 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 NDUFB11Q9NX14 153 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 CCDC59Q9P031 241 aaKnown RBP6.4□□□□□ -1.38
USP28-215ENST00000545608 PEMTQ9UBM1 199 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 DMRT1Q9Y5R6 373 aa6.4□□□□□ -1.38
USP28-215ENST00000545608 IGKV1D-13A0A0B4J2D9 117 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 FAM223BA6NKX1 122 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 PPP5D1E7EU14 171 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 E7EUB6 86 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 AIREO43918 545 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 TUSC2O75896 110 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 OR2J3O76001 311 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 ACTL6BO94805 426 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 HLA-AP01891 365 aaKnown RBP6.39□□□□□ -1.39
USP28-215ENST00000545608 HLA-DQB1P01920 261 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 IFNA6P05013 189 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 IL6RP08887 468 aaPredicted RBP6.39□□□□□ -1.39
USP28-215ENST00000545608 CD7P09564 240 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 IGKV1-13P0DP09 117 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 PSMB9P28065 219 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 BRWD1-AS2P59051 145 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 CD81P60033 236 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 DEFB114Q30KQ6 69 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 HACD4Q5VWC8 232 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 C19orf35Q6ZS72 473 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 FAM223AQ8IWN6 122 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 CCDC28AQ8IWP9 274 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 MMD2Q8IY49 270 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 VKORC1L1Q8N0U8 176 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 OR2K2Q8NGT1 345 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 NUDCD2Q8WVJ2 157 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 YIPF6Q96EC8 236 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 SPIN2AQ99865 258 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 SPIN2BQ9BPZ2 258 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 OR51E2Q9H255 320 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 HIPK2Q9H2X6 1198 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 PLEKHA3Q9HB20 300 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 OR2W1Q9Y3N9 320 aa6.39□□□□□ -1.39
USP28-215ENST00000545608 A0A1B0GW64 132 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 RBMY1BA6NDE4 496 aaKnown RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 RBMY1EA6NEQ0 496 aaKnown RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 TMEM235A6NFC5 223 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 TEX22C9J3V5 150 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 SSX5O60225 188 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 CREBL2O60519 120 aaPredicted RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 NDUFB8O95169 186 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 OR2C1O95371 312 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 IGHV3-23P01764 117 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 CTXN2P0C2S0 81 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 RBMY1DP0C7P1 496 aaKnown RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 KIR2DS2P43631 304 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 IFITM2Q01629 132 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 EIF4EBP1Q13541 118 aaPredicted RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 ARL6IP1Q15041 203 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 C15orf32Q32M92 178 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 CNIH2Q6PI25 160 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 ZNF767PQ75MW2 155 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 KCTD9Q7L273 389 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 PUSL1Q8N0Z8 303 aaKnown RBP6.38□□□□□ -1.39
USP28-215ENST00000545608 DEFB125Q8N687 156 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 NECAP1Q8NC96 275 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 ZBTB34Q8NCN2 500 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 GPHA2Q96T91 129 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 FAM110AQ9BQ89 295 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 WFDC10AQ9H1F0 79 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 DCSTAMPQ9H295 470 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 PRELID3BQ9Y3B1 194 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 SELENOKQ9Y6D0 94 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 S4R3C0 116 aa6.38□□□□□ -1.39
USP28-215ENST00000545608 SACSQ9NZJ4 4579 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 C2orf70A6NJV1 201 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 NPIPB5A8MRT5 1133 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 GGCTO75223 188 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 SLC22A5O76082 557 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 TPPPO94811 219 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 FOLR2P14207 255 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 MYOD1P15172 320 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 CD36P16671 472 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 GALP22466 123 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms