RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CACNA1BQ00975 2339 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 GFRA3O60609 400 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 MBP02144 154 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 OR10J4P0C629 311 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 ARSJQ5FYB0 599 aaPredicted RBP12.41□□□□□ -0.42
USP28-214ENST00000545540 CENPVQ7Z7K6 275 aaPredicted RBP12.41□□□□□ -0.42
USP28-214ENST00000545540 ZBTB34Q8NCN2 500 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 STARD4Q96DR4 205 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 LRFN3Q9BTN0 628 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 GGTLC1Q9BX51 225 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 MANBALQ9NQG1 85 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 TCF19Q9Y242 345 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 TLN1Q9Y490 2541 aaKnown RBP12.41□□□□□ -0.42
USP28-214ENST00000545540 IGFBP2P18065 325 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 ERVK-16P61578 105 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 CT45A1Q5HYN5 189 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 CT45A3Q8NHU0 189 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 CCL13Q99616 98 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 DKK4Q9UBT3 224 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 COL12A1Q99715 3063 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 CGAP01215 116 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 ZNF883P0CG24 379 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 FAM216BQ8N7L0 139 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 IFI27L2Q9H2X8 130 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 F2Z2F3 143 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 TNFSF13O75888 250 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 IGKV1-16P04430 117 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 TCL1AP56279 114 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 RELBQ01201 579 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 LURAP1LQ8IV03 231 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 NHLRC2Q8NBF2 726 aa12.4□□□□□ -0.42
USP28-214ENST00000545540 SAA2-SAA4A0A096LPE2 208 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 SAA2P0DJI9 122 aaPredicted RBP12.39□□□□□ -0.43
USP28-214ENST00000545540 LOXL3P58215 753 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 PKIAP61925 76 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 RPL31P62899 125 aaKnown RBP12.39□□□□□ -0.43
USP28-214ENST00000545540 LURAP1Q96LR2 239 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 AKAP6Q13023 2319 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 PTPRBP23467 1997 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 PIGBOS1A0A0B4J2F0 54 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 F6UZH7 168 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 CA2P00918 260 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 WNT2P09544 360 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 FXYD3Q14802 87 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 JOSD1Q15040 202 aaPredicted RBP12.39□□□□□ -0.43
USP28-214ENST00000545540 PLA2G2CQ5R387 149 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 SEM1Q6ZVN7 128 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 MIR17HGQ75NE6 70 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 BHLHA15Q7RTS1 189 aaPredicted RBP12.39□□□□□ -0.43
USP28-214ENST00000545540 HPRT1P00492 218 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 APELAP0DMC3 54 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 TIMP3P35625 211 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 KIAA1644Q3SXP7 199 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 TDRG1Q3Y452 100 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 OR10W1Q8NGF6 305 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 PYGO2Q9BRQ0 406 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 GCM1Q9NP62 436 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 ZNF71Q9NQZ8 489 aaPredicted RBP12.39□□□□□ -0.43
USP28-214ENST00000545540 CALYQ9NYX4 217 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 PROCRQ9UNN8 238 aa12.39□□□□□ -0.43
USP28-214ENST00000545540 CCL8P80075 99 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 SSX2Q16385 188 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 STPG3Q8N7X2 389 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 SFRP2Q96HF1 295 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 MRPL37Q9BZE1 423 aaKnown RBP12.38□□□□□ -0.43
USP28-214ENST00000545540 IL6RP08887 468 aaPredicted RBP12.38□□□□□ -0.43
USP28-214ENST00000545540 KITLGP21583 273 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 ADMP35318 185 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 CNN1P51911 297 aaKnown RBP12.38□□□□□ -0.43
USP28-214ENST00000545540 FAM27E3Q08E93 113 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 ACSF3Q4G176 576 aaPredicted RBP12.38□□□□□ -0.43
USP28-214ENST00000545540 OR4A47Q6IF82 309 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 CBLN4Q9NTU7 201 aa12.38□□□□□ -0.43
USP28-214ENST00000545540 K7EM74 188 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 VDAC2P45880 294 aaPredicted RBP12.37□□□□□ -0.43
USP28-214ENST00000545540 DLX1P56177 255 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 SPCS3P61009 180 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 ACTL10Q5JWF8 245 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 DOLPP1Q86YN1 238 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 PARD6GQ9BYG4 376 aaPredicted RBP12.37□□□□□ -0.43
USP28-214ENST00000545540 MDFIC2A0A1B0GVS7 189 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 K7EN84 100 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 GATCO43716 136 aaKnown RBP12.37□□□□□ -0.43
USP28-214ENST00000545540 EFNB3Q15768 340 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 KCNIP4Q6PIL6 250 aa12.37□□□□□ -0.43
USP28-214ENST00000545540 ZNF474Q6S9Z5 364 aaPredicted RBP12.37□□□□□ -0.43
USP28-214ENST00000545540 SRRM4A7MD48 611 aaKnown RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 ZNF705FA8MVS1 300 aaPredicted RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 SRRM5B3KS81 715 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 ADH4P08319 380 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 ZNF705DP0CH99 300 aaPredicted RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 ZNF705BP0CI00 300 aaPredicted RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 ZNF90Q03938 601 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 TEX38Q6PEX7 206 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 SGK494Q96LW2 274 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 VWC2Q2TAL6 325 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 ANAPC16Q96DE5 110 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 GGCTO75223 188 aaKnown RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 CA1P00915 261 aaPredicted RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 CRYBB3P26998 211 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms