RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 HCFC1P51610 2035 aa11.35□□□□□ -0.59
VPS33A-208ENST00000543633 Q0VG73 95 aa11.35□□□□□ -0.59
VPS33A-208ENST00000543633 RNFT1Q5M7Z0 435 aa11.35□□□□□ -0.59
VPS33A-208ENST00000543633 RFESDQ8TAC1 157 aa11.35□□□□□ -0.59
VPS33A-208ENST00000543633 LRRC29Q8WV35 223 aa11.35□□□□□ -0.59
VPS33A-208ENST00000543633 YTHDF2Q9Y5A9 579 aaKnown RBP11.35□□□□□ -0.59
VPS33A-208ENST00000543633 DOCK11Q5JSL3 2073 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 MUC6Q6W4X9 2439 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 DEFB108AA8MXU0 73 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 MT-ND6P03923 174 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 TNFSF10P50591 281 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 LGALS4P56470 323 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 RPL31P62899 125 aaKnown RBP11.34□□□□□ -0.59
VPS33A-208ENST00000543633 ZNF90Q03938 601 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 EFNB3Q15768 340 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 POU2AF1Q16633 256 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 GCSAMQ8N6F7 178 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 FAM169BQ8N8A8 192 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 ADTRPQ96IZ2 230 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 IFI27L2Q9H2X8 130 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 IL17BQ9UHF5 180 aa11.34□□□□□ -0.59
VPS33A-208ENST00000543633 CRISP2P16562 243 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 NPY1RP25929 384 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 ATP5IP56385 69 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-208ENST00000543633 ARG2P78540 354 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PRR20EP86478 221 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PRR20CP86479 221 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PRR20DP86480 221 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PRR20BP86481 221 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PRR20AP86496 221 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 RPEL1Q2QD12 228 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 HES3Q5TGS1 186 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 TPRX1Q8N7U7 411 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 C1orf159Q96HA4 380 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 TMEM167BQ9NRX6 74 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 PGPEP1LA6NFU8 196 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 TNFSF13O75888 250 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 CECR9P0C854 216 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 THBS3P49746 956 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 LOXL3P58215 753 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 LINC00205P59089 165 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 STPG3Q8N7X2 389 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 SLC24A4Q8NFF2 622 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 EAF1Q96JC9 268 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-208ENST00000543633 GNB1LQ9BYB4 327 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 MRPL18Q9H0U6 180 aaKnown RBP11.33□□□□□ -0.6
VPS33A-208ENST00000543633 TMEM14BQ9NUH8 114 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 AURKAIP1Q9NWT8 199 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-208ENST00000543633 DOCK7Q96N67 2140 aa11.33□□□□□ -0.6
VPS33A-208ENST00000543633 DIDO1Q9BTC0 2240 aaKnown RBP11.32□□□□□ -0.6
VPS33A-208ENST00000543633 AQP7O14520 342 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 BMP5P22003 454 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 TDGF1P3P51864 188 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 HSPE1P61604 102 aaKnown RBP11.32□□□□□ -0.6
VPS33A-208ENST00000543633 EDDM3AQ14507 147 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 RTL8BQ17RB0 113 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 TMEM30BQ3MIR4 351 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 ARSJQ5FYB0 599 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-208ENST00000543633 WDR73Q6P4I2 378 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 TCF23Q7RTU1 214 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 GCNT2Q8N0V5 402 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 PNKDQ8N490 385 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 NEUROG1Q92886 237 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 SDSLQ96GA7 329 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 TBX15Q96SF7 602 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 ENY2Q9NPA8 101 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 TP53TG3Q9ULZ0 132 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 KNTC1P50748 2209 aa11.32□□□□□ -0.6
VPS33A-208ENST00000543633 IGKV1D-17A0A075B6S4 117 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 K7EN84 100 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 NUPR1O60356 82 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 TMEM183BQ1AE95 376 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 DEFB124Q8NES8 71 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 SLC35E1Q96K37 410 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 DCTN5Q9BTE1 182 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 C19orf24Q9BVV8 132 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 CBLN4Q9NTU7 201 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 SLC45A2Q9UMX9 530 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 TET2Q6N021 2002 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-208ENST00000543633 CUL9Q8IWT3 2517 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 SAA2-SAA4A0A096LPE2 208 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 IGHV2OR16-5A0A0B4J2B6 119 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 ZNF705FA8MVS1 300 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-208ENST00000543633 TFF1P04155 84 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 ZNF705DP0CH99 300 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-208ENST00000543633 ZNF705BP0CI00 300 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-208ENST00000543633 LINC00310P59036 64 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 TPTE2P1Q5T6R2 138 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 ABHD12Q8N2K0 398 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 OR1L6Q8NGR2 347 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 MSL2Q9HCI7 577 aa11.31□□□□□ -0.6
VPS33A-208ENST00000543633 CGB3P0DN86 165 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 CGB7P0DN87 165 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 CBLN1P23435 193 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 KIR2DL2P43627 348 aaPredicted RBP11.3□□□□□ -0.6
VPS33A-208ENST00000543633 RPL39P5Q59GN2 51 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 Q6ZWC4 215 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 OR5AU1Q8NGC0 362 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 SSMEM1Q8WWF3 244 aa11.3□□□□□ -0.6
VPS33A-208ENST00000543633 WFIKKN1Q96NZ8 548 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms