RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PHB2Q99623 299 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 HSPB9Q9BQS6 159 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 PDCD10Q9BUL8 212 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 GPN1Q9HCN4 374 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 NUDT15Q9NV35 164 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 TRAV41A0A0B4J266 112 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 FCN1O00602 326 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 RBMXL2O75526 392 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 OPN1MWP04001 364 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 OPN1MW2P0DN77 364 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 OPN1MW3P0DN78 364 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 RPL27AP46776 148 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 GNB1P62873 340 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 SUPT4H1P63272 117 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 SP6Q3SY56 376 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 TMEM268Q5VZI3 342 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 LYG2Q86SG7 212 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 VKORC1L1Q8N0U8 176 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 OR1L8Q8NGR8 309 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 SRSF12Q8WXF0 261 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 COA4Q9NYJ1 87 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 TMED3Q9Y3Q3 217 aa13.81□□□□□ -0.2
CLSTN3-210ENST00000540931 ATP6V0E1O15342 81 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 BRI3O95415 125 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 SLC25A6P12236 298 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 IFITM3Q01628 133 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 PPP1R1AQ13522 171 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 TMEM65Q6PI78 240 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 SELENOHQ8IZQ5 122 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 OR5AU1Q8NGC0 362 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 SLA2Q9H6Q3 261 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 ZFP57Q9NU63 452 aa13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 FOXA2Q9Y261 457 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-210ENST00000540931 A0A1W2PN81 502 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 C9orf170A2RU37 121 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 C15orf61A6NNL5 157 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 IFNA21P01568 189 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 IGKV1-39P01597 117 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 IGHG4P01861 327 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 IGKV1D-39P04432 117 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 IL5P05113 134 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 CHRNA7P36544 502 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 DHRS2Q13268 280 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 FOXE3Q13461 319 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 CXorf66Q5JRM2 361 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 UNQ5815/PRO19632Q6UWF5 114 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 Q6ZS46 218 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 MINDY2Q8NBR6 621 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 OR1L6Q8NGR2 347 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 GRPEL2Q8TAA5 225 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 QTRT1Q9BXR0 403 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 TPSG1Q9NRR2 321 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 TMEM14BQ9NUH8 114 aa13.79□□□□□ -0.2
CLSTN3-210ENST00000540931 MSGN1A6NI15 193 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 SH2D7A6NKC9 451 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 FBXO24O75426 580 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 LY86O95711 162 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 TRAPPC2P0DI81 140 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 TRAPPC2BP0DI82 140 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 PJVKQ0ZLH3 352 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 FAM209BQ5JX69 171 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 NRARPQ7Z6K4 114 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 OR52E5Q8NH55 327 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 OR51B2Q9Y5P1 312 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 TENM1Q9UKZ4 2725 aa13.78□□□□□ -0.2
CLSTN3-210ENST00000540931 TRAV6A0A075B6T7 132 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 A0A1B0GU03 582 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 P0C879 139 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 SULT1A3P0DMM9 295 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 SULT1A4P0DMN0 295 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 PPIFP30405 207 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 HSPE1P61604 102 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 SLC35G3Q8N808 338 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 RNF152Q8N8N0 203 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 LFNGQ8NES3 379 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 WIPF2Q8TF74 440 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 CASTOR1Q8WTX7 329 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 MITD1Q8WV92 249 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 MARVELD1Q9BSK0 173 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 FLVCR2Q9UPI3 526 aa13.77□□□□□ -0.21
CLSTN3-210ENST00000540931 A0A0G2JLM5 398 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 NPIPB5A8MRT5 1133 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 INMT-MINDY4F8WBC2 141 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 IGKV1-5P01602 117 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 OR9G9P0C7N8 305 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 HIST1H1BP16401 226 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 ANXA7P20073 488 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 OR2B8PP59922 312 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 CFHR3Q02985 330 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 ECSCRQ19T08 205 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 MRGPRG-AS1Q2M3A8 158 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 RGS21Q2M5E4 152 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 AARDQ4LEZ3 155 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 TTC9CQ8N5M4 171 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 FAM110DQ8TAY7 271 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 ZNF431Q8TF32 576 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 NOL4LQ96MY1 436 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 CITED1Q99966 193 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 ENY2Q9NPA8 101 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms