RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TRAV1-1A0A0B4J248 108 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 FAM78AQ5JUQ0 283 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 TMEM126AQ9H061 195 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 TNFRSF19Q9NS68 423 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 CCL26Q9Y258 94 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 TRBV7-9A0A0J9YWB2 115 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 J3KT08 172 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 SAP30O75446 220 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 LGALS1P09382 135 aaKnown RBP7.46□□□□□ -1.22
YBX3-208ENST00000540447 ZNF688P0C7X2 276 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 GNB2P62879 340 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 WDR82Q6UXN9 313 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 ATP5L2Q7Z4Y8 100 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 ABHD12Q8N2K0 398 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 VSTM2LQ96N03 204 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 RAB1BQ9H0U4 201 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 CXXC4Q9H2H0 198 aa7.46□□□□□ -1.22
YBX3-208ENST00000540447 A0A1W2PS18 150 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 C9JQL5 133 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 M0R1B8 84 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 MMP23AO75900 390 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 NDUFC2O95298 119 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 THY1P04216 161 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 APELAP0DMC3 54 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 CD38P28907 300 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 DCAF12Q5T6F0 453 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 FMC1Q96HJ9 113 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 SYNGR3O43761 229 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 FGF12P61328 243 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 Q6ZWC4 215 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 SPEM1Q8N4L4 309 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 OR10J6PQ8NGY7 276 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 C18orf12Q96KH6 178 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 Q6ZVH6 145 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 ZAR1Q86SH2 424 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 Q96M66 194 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 TNFSF14O43557 240 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 SRD5A2P31213 254 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 Q0VG73 95 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 ZP4Q12836 540 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 ZIC1Q15915 447 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 MST1LQ2TV78 715 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 KHDC1LQ5JSQ8 128 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 INO80CQ6PI98 192 aaPredicted RBP7.45□□□□□ -1.22
YBX3-208ENST00000540447 PATE1Q8WXA2 126 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 KISS1RQ969F8 398 aaPredicted RBP7.45□□□□□ -1.22
YBX3-208ENST00000540447 MOB4Q9Y3A3 225 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 CENPVL1A0A0U1RR11 272 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 PPBPP02775 128 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 TEX43Q6ZNM6 134 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 C8orf44Q96CB5 159 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 KCNK17Q96T54 332 aa7.45□□□□□ -1.22
YBX3-208ENST00000540447 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 M0R2P5 195 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 BVES-AS1Q5T3Y7 98 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.44□□□□□ -1.22
YBX3-208ENST00000540447 A0A1B0GUS0 222 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 LIPT2A6NK58 231 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 H3BMM0 161 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 BHLHA9Q7RTU4 235 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 ARPC1AQ92747 370 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 UBE2WQ96B02 151 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 JMJD8Q96S16 334 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A10PA6NDY2 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A18PA6NE21 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A16PA6NEW6 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A20PA6NIJ5 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A8PA6NJQ4 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A7PA6NKC0 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A22PA8MWA6 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A12PA8MX19 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A5PA8MXJ8 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A23PA8MXZ1 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 CDX4O14627 284 aaPredicted RBP7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A15PP0C7V4 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A13PP0C7W8 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A14PP0C7W9 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A24PP0C7X0 464 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 HTN1P15515 57 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 C5orf47Q569G3 176 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 CDCP2Q5VXM1 449 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 C5P01031 1676 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 FAM90A2PQ658T7 463 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.44□□□□□ -1.222e-7■■■■□ 25
YBX3-208ENST00000540447 VSIRQ9H7M9 311 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 IL23AQ9NPF7 189 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 KIR2DL5BA0A0G2JN68 375 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 KIR2DL5BA0A0G2JPC4 375 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 LILRA1O75019 489 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 MNX1P50219 401 aaPredicted RBP7.44□□□□□ -1.22
YBX3-208ENST00000540447 KIR2DL5AQ8N109 375 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 LINC01555Q8NAE3 123 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 DUSP23Q9BVJ7 150 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 CCDC88CQ9P219 2028 aa7.44□□□□□ -1.22
YBX3-208ENST00000540447 CD55P08174 381 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 PLNP26678 52 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 ZXDCQ2QGD7 858 aaPredicted RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 S100A7L2Q5SY68 101 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 LHX8Q68G74 356 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 PRSS41Q7RTY9 318 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms