RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PQLC2Q6ZP29 291 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 GMPPAQ96IJ6 420 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-237ENST00000539504 EAF1Q96JC9 268 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-237ENST00000539504 FBXL7Q9UJT9 491 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 TCF19Q9Y242 345 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 TBL2Q9Y4P3 447 aaKnown RBP9.34□□□□□ -0.91
SYNE1-237ENST00000539504 SVILO95425 2214 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 HELTA6NFD8 242 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 OR7C2O60412 319 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 LINC00310P59036 64 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 EFNB3Q15768 340 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 C11orf42Q8N5U0 333 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 TMEM105Q8N8V8 129 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 CNEP1R1Q8N9A8 125 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 STARD4Q96DR4 205 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 TMEM140Q9NV12 185 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 PPIAL4AQ9Y536 164 aa9.34□□□□□ -0.92
SYNE1-237ENST00000539504 TCF21O43680 179 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 LGALS4P56470 323 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 TIGITQ495A1 244 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 SPATA45Q537H7 98 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 CENPWQ5EE01 88 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 COL5A1-AS1Q5SY13 56 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 ST6GALNAC3Q8NDV1 305 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 RNASE7Q9H1E1 156 aaKnown RBP9.33□□□□□ -0.92
SYNE1-237ENST00000539504 DCAF16Q9NXF7 216 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 TRIOBPQ9H2D6 2365 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 SIAH2O43255 324 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 FAM216AQ8WUB2 273 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 LRRC29Q8WV35 223 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 CXXC4Q9H2H0 198 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 CBY1Q9Y3M2 126 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 IQCF6A8MYZ5 107 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 KLRC4-KLRK1H3BQV0 150 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 GFRA3O60609 400 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 NPY1RP25929 384 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 MMDQ15546 238 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 ZNF766Q5HY98 468 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 Q6ZN92 141 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 LEAP2Q969E1 77 aa9.33□□□□□ -0.92
SYNE1-237ENST00000539504 ADH4P08319 380 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 RAB7AP51149 207 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 TMEM249Q2WGJ8 235 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 ZNF718Q3SXZ3 478 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 MIR17HGQ75NE6 70 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 OR4B1Q8NGF8 309 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 NRN1Q9NPD7 142 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 PRRC2CQ9Y520 2896 aaKnown RBP9.32□□□□□ -0.92
SYNE1-237ENST00000539504 YPEL1O60688 119 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 IGFBP2P18065 325 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 WDR82Q6UXN9 313 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 ATOH7Q8N100 152 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 WDR31Q8NA23 367 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 FAM122AQ96E09 287 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 YPEL2Q96QA6 119 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 KLF13Q9Y2Y9 288 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-237ENST00000539504 TRGV5A0A0B4J1U4 118 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 SP1P08047 785 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 SRIP30626 198 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 HNRNPA3P51991 378 aaKnown RBP9.32□□□□□ -0.92
SYNE1-237ENST00000539504 FAM19A2Q8N3H0 131 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 RNF2Q99496 336 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 WNT10AQ9GZT5 417 aa9.32□□□□□ -0.92
SYNE1-237ENST00000539504 GPR179Q6PRD1 2367 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 GPX1P07203 203 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 OR10J4P0C629 311 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 CHRNB4P30926 498 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 PRDX2P32119 198 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 SLC24A4Q8NFF2 622 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 RNF114Q9Y508 228 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 TRAV9-1A0A075B6T8 112 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 VDAC2P45880 294 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-237ENST00000539504 BORCS7Q96B45 105 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 DUSP13Q9UII6 198 aa9.31□□□□□ -0.92
SYNE1-237ENST00000539504 IGHV3OR15-7A0A075B7D8 119 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 PROP1O75360 226 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 SFTPCP11686 197 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 IGHV1-2P23083 117 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 GATA2P23769 480 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-237ENST00000539504 RELBQ01201 579 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 WDR73Q6P4I2 378 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 C11orf53Q8IXP5 236 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 Q8TCH9 128 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 HES4Q9HCC6 221 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 DNAJC4Q9NNZ3 241 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 ICE1Q9Y2F5 2266 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 TRGV10A0A0A0MS01 117 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 CA2P00918 260 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 MYOD1P15172 320 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 CD46P15529 392 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 Q0VG73 95 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 TMEM164Q5U3C3 297 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 NHLRC2Q8NBF2 726 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 SLC35D1Q9NTN3 355 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 FOXJ2Q9P0K8 574 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 IL19Q9UHD0 177 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 MED13Q9UHV7 2174 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 V9GYV3 84 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 J3QW42 95 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 OR2Z1Q8NG97 314 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms