RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 COL4A6Q14031 1691 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 SPTBN1Q01082 2364 aaKnown RBP9.1□□□□□ -0.95
CLIP1-209ENST00000537178 A0A1B0GV72 72 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 NPIPB4C9JG80 1138 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM262E9PQX1 116 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 IGHV4-34P06331 123 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 ARF6P62330 175 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF146Q15072 292 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 BIVMQ86UB2 503 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 PSMG3Q9BT73 122 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-209ENST00000537178 FAM206AQ9NX38 181 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 DMRT1Q9Y5R6 373 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 IGLV1-36A0A0B4J1U3 117 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 TRAV8-6A0A0B4J262 113 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 ATP5LO75964 103 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 VENTXO95231 258 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 DANCRP0C864 163 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 TFF2Q03403 129 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 CBLN4Q9NTU7 201 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 CEP250Q9BV73 2442 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 OBSL1O75147 1896 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 PEBP1P30086 187 aaKnown RBP9.1□□□□□ -0.95
CLIP1-209ENST00000537178 GLIPR1P48060 266 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 UCP3P55916 312 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 PIKFYVEQ9Y2I7 2098 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 GCHFRP30047 84 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 MRPL16Q9NX20 251 aaKnown RBP9.09□□□□□ -0.95
CLIP1-209ENST00000537178 TNFRSF18Q9Y5U5 241 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 ESPL1Q14674 2120 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 SYNGR3O43761 229 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 PLSCR2Q9NRY7 297 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 LOC105371242A0A075B767 164 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 TRBV5-7A0A0A0MS05 114 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 DPRXA6NFQ7 191 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 ZIC3O60481 467 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 IFI6P09912 130 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 GPX4P36969 197 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM160Q9NX00 188 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 FOXI3A8MTJ6 420 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-209ENST00000537178 J3QW42 95 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 FOXH1O75593 365 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 ZXDCQ2QGD7 858 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-209ENST00000537178 CENPVQ7Z7K6 275 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-209ENST00000537178 DCTN5Q9BTE1 182 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 CACNA1GO43497 2377 aa9.09□□□□□ -0.95
CLIP1-209ENST00000537178 H3BRM9 83 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 ATP5J2P56134 94 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 RFLNBQ8N5W9 214 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 SLC25A38Q96DW6 304 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 NUDT11Q96G61 164 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 Q96M66 194 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 AMELYQ99218 206 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 SH3BGRL3Q9H299 93 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV1-45A0A0A0MS14 117 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 ZNF815PA8K554 130 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 PF4P02776 101 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 PCP4P48539 62 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 CENPWQ5EE01 88 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 A0A1B0GWB2 263 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 GRIFINA4D1Z8 144 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 H3BTX0 84 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 HAX1O00165 279 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 IL11P20809 199 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 KLF14Q8TD94 323 aaPredicted RBP9.08□□□□□ -0.96
CLIP1-209ENST00000537178 MARVELD3Q96A59 401 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 C9JCJ5 164 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 FGF5P12034 268 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 HOXA5P20719 270 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 LY6EQ16553 131 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 CD200R1LQ6Q8B3 271 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 ATOH7Q8N100 152 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 SMRP1Q8NCR6 262 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 C2orf88Q9BSF0 95 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 AICDAQ9GZX7 198 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 MTCL1Q9Y4B5 1905 aaKnown RBP9.08□□□□□ -0.96
CLIP1-209ENST00000537178 SCN3AQ9NY46 2000 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 TRAV24A0A0B4J272 114 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 C5orf67F2Z3F1 127 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 DNASE2BQ8WZ79 361 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 LOXL4Q96JB6 756 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 SSBP3Q9BWW4 388 aaPredicted RBP9.08□□□□□ -0.96
CLIP1-209ENST00000537178 LHFPL6Q9Y693 200 aa9.08□□□□□ -0.96
CLIP1-209ENST00000537178 A0A1W2PQF6 199 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 ASIPP42127 132 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 PDLIM4P50479 330 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-209ENST00000537178 STPG1Q5TH74 334 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 NUDT10Q8NFP7 164 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 C5orf66Q9H5L9 145 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 LINC00587B1AMM8 73 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 GCM2O75603 506 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-209ENST00000537178 BEND2Q8NDZ0 799 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 C19orf67A6NJJ6 358 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 ICAM4Q14773 271 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 VCX2Q9H322 139 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 RRHO14718 337 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 REG1AP05451 166 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 NBEAP1P0C6P0 100 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 FOXA3P55318 350 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-209ENST00000537178 TMPRSS3P57727 454 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms